Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g03850 atggagagcgaagttgcattccaaaaattgctgcaagctcagaataaggcatatgttaataagacagatgctctcaactggcctcaggaatccacagttaaaaatgctctaggatgtagtcttctcagtctgaatctgaataatttagagctttcccaaaatcaagagcagcagtccctcaaccaattgggtttgctgcaaattgagctagaggagctgaagaaggagaatcaaaatttaagatctatgctaaatgatataactgaacactacgctgctcttcagaatcagttattgttggtgatccagcacaagaaactgtcttcatcacctccaaatagtgaattcaataaccaaatagcatcacaagtagcaaaattcagcgaagatcgagcattttgcaagaaagctagagtgtctgtaagagcacgatcagaatcatctatgaagatatcaaagggaaaccattgtcctcgggcctactatcgttgcaacatgggaacagcatgtccagttcgcaagcaggttcaaaggtgtgctgaggatgagggtgtggtggtgacaacatatgaggggaatcataatcatccacttccaccagcagcccggtccatggcgtgcacaacatcagcagcactgagcatgttcctttctggctcaactactactttacatgccaccaattaccctatttcagatctcttctctccactatctacttctacctaccatccttctgcatcatcatgtccggttataactttggacttaacccagccctctaggaactaccacaaattcccaactcctgcttcttcaaacccttctcctcttttattgcctctttaccctcaacaatctcagggattaccctctgagaaaaaccttgccttggtggatgctgttagtgccgtcataactaaggatccttctcttaaggcagcattagaagcagccgtttgctcaatcattggagactctcggttgccaacttag 996 0.0 MESEVAFQKLLQAQNKAYVNKTDALNWPQESTVKNALGCSLLSLNLNNLELSQNQEQQSLNQLGLLQIELEELKKENQNLRSMLNDITEHYAALQNQLLLVIQHKKLSSSPPNSEFNNQIASQVAKFSEDRAFCKKARVSVRARSESSMKISKGNHCPRAYYRCNMGTACPVRKQVQRCAEDEGVVVTTYEGNHNHPLPPAARSMACTTSAALSMFLSGSTTTLHATNYPISDLFSPLSTSTYHPSASSCPVITLDLTQPSRNYHKFPTPASSNPSPLLLPLYPQQSQGLPSEKNLALVDAVSAVITKDPSLKAALEAAVCSIIGDSRLPT 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g03850 331 SUPERFAMILY WRKY DNA-binding domain 150 199 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pste6g03850 331 Gene3D WRKY domain 146 200 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pste6g03850 331 Coils Coil 56 97 - -
Pste6g03850 331 ProSiteProfiles WRKY domain profile. 150 199 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pste6g03850 331 Pfam WRKY DNA -binding domain 150 197 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pste6g03850 331 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 51 325 IPR044810 GO:0003700
Pste6g03850 331 SMART WRKY_cls 150 198 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g03850 Pste-Chr6 27724974 27729661 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g03850 121 259 WRKY Transcription Factor Family AT4G04450 53.503 1.14e-42 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pste6g03850 WRKY 1.2e-13 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g03850 6 27724974 27729661 Pste1g00854 1 2637609 2639978 PCT
Pste2g01136 2 12367197 12375787 Pste6g03850 6 27724974 27729661 PCT