Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g03842 atgggaacattagaacaaattgatgctcctcaaacccagtcatcatcatcatcttcttcttccattgatagcaacaaccatccttctaggactccaccaccctcttccccttcttcaagtgcctgcagaaacagaactgatttgagcactgacctcagacttggtctttgcatctctccttcttctcaatctgaattacccttccattcaacaccgagggaggaaagttttaactggccaccaattaagtccatattgaggagcacccttgtggggaaacaaagccatctgggccaaagaccctccttgtttgtaaaagtctatatggaaggcatccccataggaagaaaattaaatctgatggcacattatagctatgatggactagtgaaaactcttggtcatatgtttcggaccaccattctctgtcctaattctcaaccacttaattctgggatttttcacgtgctaacttatgaggatcaagaaggggactggatgctggtaggagatgtgccgtgggataatcggaaagtcaagcacaaagtagaatgtcatggagaaccacctcaagtaggagaagagtctggtaacactgccacgaaagggttgccaccctcgacgattaacaaggagaatgctgctaggtataaagagattcccgtgtttgatgaggagtttaacgagtggtgcaaaccatggaaggggtcgaagaatatagttgagatgtttcaagattcagaaggtaattgggtggccaagcctacagaacttgaacaggttgtcagcctcttctataaagatttgtttttagaggatcagaatcgtacaccaactagcatccatggagctttccctcccctgttagtggaagaccttgctttgttcagacaacctatatccaaggtggagattagaaaaacaagttttaccatggaaacttcaaagcaccaggtaatccactctataaagcataagaaaggcaataaaggatggatgcctaaaggtgcagggacttcgtgtaaggttactctagttggcgtggagctccctttgcaaaccaaaaaatgcaaggtgtcttggcctgtggataacaaggcaagcaaatgtcgcattgctcacaaaggcagggtggagaatcatgataagtccaaaggacttgtagcttcgagaggagatcaagaggacgatgttccacgatggaaagggacaacacatggcaaattctctacaaaatcagcctatgaaagtttattgaatttgactaatttacagaagatccctatttttgaggcagtgtggaagtggaaagacccataa 1320 0.0 MGTLEQIDAPQTQSSSSSSSSIDSNNHPSRTPPPSSPSSSACRNRTDLSTDLRLGLCISPSSQSELPFHSTPREESFNWPPIKSILRSTLVGKQSHLGQRPSLFVKVYMEGIPIGRKLNLMAHYSYDGLVKTLGHMFRTTILCPNSQPLNSGIFHVLTYEDQEGDWMLVGDVPWDNRKVKHKVECHGEPPQVGEESGNTATKGLPPSTINKENAARYKEIPVFDEEFNEWCKPWKGSKNIVEMFQDSEGNWVAKPTELEQVVSLFYKDLFLEDQNRTPTSIHGAFPPLLVEDLALFRQPISKVEIRKTSFTMETSKHQVIHSIKHKKGNKGWMPKGAGTSCKVTLVGVELPLQTKKCKVSWPVDNKASKCRIAHKGRVENHDKSKGLVASRGDQEDDVPRWKGTTHGKFSTKSAYESLLNLTNLQKIPIFEAVWKWKDP 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g03842 439 MobiDBLite consensus disorder prediction 194 208 - -
Pste6g03842 439 MobiDBLite consensus disorder prediction 382 404 - -
Pste6g03842 439 MobiDBLite consensus disorder prediction 188 209 - -
Pste6g03842 439 Pfam AUX/IAA family 71 175 IPR033389 -
Pste6g03842 439 ProSiteProfiles PB1 domain profile. 102 188 IPR000270 GO:0005515
Pste6g03842 439 MobiDBLite consensus disorder prediction 1 29 - -
Pste6g03842 439 MobiDBLite consensus disorder prediction 1 45 - -
Pste6g03842 439 Gene3D - 97 186 - -
Pste6g03842 439 MobiDBLite consensus disorder prediction 382 403 - -
Pste6g03842 439 SUPERFAMILY CAD & PB1 domains 96 175 - -
Pste6g03842 439 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 48 174 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g03842 Pste-Chr6 27620827 27626926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g03842 105 175 B3 DNA Binding Superfamily AT2G46530 38.889 2.44e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pste6g03842 AUX_IAA 2.9e-23 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g03842 6 27620827 27626926 Pste6g03842 6 27620827 27626926 ECH