Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g03781 atgcgggacagtgagaagaacttaaacaacaaaggatctaaaaaacccagtcatttgaaggcacgtacaaagtgccaagggaagaagggtaaagtgaaagcaggatcaaaatctcattcgaagaatgttggcactgacataccaaggaaaatagttatctcttctctcaagatcaaagggccacgaaaggattcttctgataggaagattcctggaaaaaatttgcttgaggagaacaaaaaatcttcgcagaagccatcctcagagttacaaggcaaaagagtttctcttagctctagaagagagagggaaaatgctgatggggcaataaagcttcaaagaatgaagaggaagagaaagaagaaaaggcaaagaaataatgtggatcttgatgatccttcacgcctgcagaggagagcaaggtatcttttaatcaaaatgaagctagagcagaaccttattgatgcttactctggagaaggttggaaaggtcagagtcgagaaaagattaggccagaaaaggagctacaaagagcaaggaaacagattttaaaatgtagacttggtattcgtgatgccattcgtcagttggattctcttggttcactgagtagcattgaagattctgctgttgctccgaatggatctgtttaccatgaacatatactctgcgtaaagtgcaaggtgaatgaagaacatccagaagaaaatattatagtatgcaatggtacatgcaagcgtgcttttcaccaacaatgtctagaccctcctttggaaaccgaaaatattacttctggagagcagggctggttttgtaaattttgtgaatgtaagatggaaatactggaggcaatgaatgctcatcttggaactcacttctcgttgcacagtacttggcaggatgtattcaaagaagaggctgctagacctgatggtgatgctgcattactgaatcctgaagaagaatggccatcagatgattccgaagatgatgattatgacccagagaggaaagaagacagccacaatatcaacacagaaggaactaatgatagtgaacctaatgatttaagcagtgctaccagtctgtgttcttcagatggtgaatgttttccggttgatgctgtcggtcatgaatatttttctatcaacagcagtatagattctgatgagtctgaggacaaagcctgtggccggaggcagcgtaaagccgttgactacaagaaactttatgatatcatgcaaaagaagtttcatttgagttcatctttccaggaaatgtttggaaaggatgctcctgcatatgaacaattgagtgaagatgaagattggggtcctggcaagagaaagcgaagagaaaaggagtgtgatgctgttgattctcttatgactttgcatgaaagtgagaataagcaccccagtaatgagcacaacaacttgacaagaaaagattctacaagcataaatatcaaaaggcattgttttaggattccgcgtgatgcagttgagaagcttcgccaagtttttgctgagaatgaacttcctcccagatctattagagagggtctttcaaaagagctgggacttgacactgaaaaggtcagcaaatggttcaagaatgcacgctacttggcacttaaaaacaggaagcatcaagcacaagaagcagcagaacagctgcagagtatcactcctacgaagaactccagattacaaaatcaggagaaggctgatcttttgaaatcaaagacctcaaacattactgtgacatgttctgcgaaaaatgttactggaagaaagacaatgaagtcatctagcaagaaaagaaaaccagaaataactccgctgcctggaaaaaatggcaacaaggattttatggacattagtgatgatgtgagcttgaagaaactgttgaagaaaagaaaaaaaaggttggtaaattttagatttgaaggagactctaaagcagcagagttggagtttgaaaggctatgcagattgaagacaaaaatagatagcatgaagcaaaaattaactgcaattgaaaattacaggttgggtgcaaatgaaccccattctaatgaatcatcgattgtatatgtaccgacggctgtgttaagggaaaaggttgaatga 2136 0.0 MRDSEKNLNNKGSKKPSHLKARTKCQGKKGKVKAGSKSHSKNVGTDIPRKIVISSLKIKGPRKDSSDRKIPGKNLLEENKKSSQKPSSELQGKRVSLSSRRERENADGAIKLQRMKRKRKKKRQRNNVDLDDPSRLQRRARYLLIKMKLEQNLIDAYSGEGWKGQSREKIRPEKELQRARKQILKCRLGIRDAIRQLDSLGSLSSIEDSAVAPNGSVYHEHILCVKCKVNEEHPEENIIVCNGTCKRAFHQQCLDPPLETENITSGEQGWFCKFCECKMEILEAMNAHLGTHFSLHSTWQDVFKEEAARPDGDAALLNPEEEWPSDDSEDDDYDPERKEDSHNINTEGTNDSEPNDLSSATSLCSSDGECFPVDAVGHEYFSINSSIDSDESEDKACGRRQRKAVDYKKLYDIMQKKFHLSSSFQEMFGKDAPAYEQLSEDEDWGPGKRKRREKECDAVDSLMTLHESENKHPSNEHNNLTRKDSTSINIKRHCFRIPRDAVEKLRQVFAENELPPRSIREGLSKELGLDTEKVSKWFKNARYLALKNRKHQAQEAAEQLQSITPTKNSRLQNQEKADLLKSKTSNITVTCSAKNVTGRKTMKSSSKKRKPEITPLPGKNGNKDFMDISDDVSLKKLLKKRKKRLVNFRFEGDSKAAELEFERLCRLKTKIDSMKQKLTAIENYRLGANEPHSNESSIVYVPTAVLREKVE 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g03781 711 Pfam PHD-finger 224 278 IPR019787 -
Pste6g03781 711 MobiDBLite consensus disorder prediction 315 363 - -
Pste6g03781 711 FunFam pathogenesis-related homeodomain protein 490 554 - -
Pste6g03781 711 MobiDBLite consensus disorder prediction 320 334 - -
Pste6g03781 711 SUPERFAMILY Homeodomain-like 491 555 IPR009057 -
Pste6g03781 711 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 17 709 - -
Pste6g03781 711 SMART PHD_3 223 276 IPR001965 -
Pste6g03781 711 CDD PHD_PRHA_like 223 275 IPR045876 -
Pste6g03781 711 ProSitePatterns Zinc finger PHD-type signature. 224 275 IPR019786 -
Pste6g03781 711 MobiDBLite consensus disorder prediction 596 624 - -
Pste6g03781 711 MobiDBLite consensus disorder prediction 114 133 - -
Pste6g03781 711 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 215 272 IPR013083 -
Pste6g03781 711 ProSiteProfiles 'Homeobox' domain profile. 488 548 IPR001356 GO:0003677
Pste6g03781 711 SMART HOX_1 490 552 IPR001356 GO:0003677
Pste6g03781 711 CDD homeodomain 491 552 IPR001356 GO:0003677
Pste6g03781 711 MobiDBLite consensus disorder prediction 347 363 - -
Pste6g03781 711 Gene3D - 490 559 - -
Pste6g03781 711 MobiDBLite consensus disorder prediction 13 36 - -
Pste6g03781 711 MobiDBLite consensus disorder prediction 60 84 - -
Pste6g03781 711 MobiDBLite consensus disorder prediction 95 109 - -
Pste6g03781 711 MobiDBLite consensus disorder prediction 1 109 - -
Pste6g03781 711 Pfam Homeodomain 499 543 IPR001356 GO:0003677
Pste6g03781 711 ProSiteProfiles Zinc finger PHD-type profile. 221 278 IPR019787 -
Pste6g03781 711 Coils Coil 543 563 - -
Pste6g03781 711 SUPERFAMILY FYVE/PHD zinc finger 216 281 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g03781 Pste-Chr6 26968284 26973835 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g03781 126 553 Homeobox Transcription Factor Family AT4G29940 53.547 4.34e-144 438
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Pste6g03781 Homeodomain 9.2e-08 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g03781 6 26968284 26973835 Pste6g03781 6 26968284 26973835 ECH
Pste6g03781 6 26968284 26973835 Pste2g01454 2 15850344 15857468 PCT