Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g03774 atggatattggtgaagagtacaagcattattgggagaccaacatgttttttcaaaacgaagagcttgacagctgggcaatggatgaagctgcgttctccgggtactatgattcaagttccccggacggtaccggtgcttcatccttggcaacaaagaacattgtttcggagagaaataggaggaagaggctgaacgaaaggctttttgctcttagagcagtggtccccaatattagcaagatggataaggcttctatcattaaggatgctatagagtacatccagcgcttgcaagaccaagagaagagaatccaagccgagatttcggatcttcaatctctgaacatcaaaaccccaacctaccaatttgaccacgaccttcctattctgcttaggtctaagaagaacagaacagaacagctatttgattctgtcagttcaagaaattccccaattgaaattattgagctaagggttacacacaaggaagagaaaatgtttatggtgagcttgacatgtagtaagaggacagacacaatggtgaaactgtgtgaggtgttcgagtccttaaagctgaaggtcattacagccactgtcacttctttttcagggacgatttcgaagacagtcttcctcgaggccaatactttaattaaagtggaaaacccattttgcatttaa 681 0.0 MDIGEEYKHYWETNMFFQNEELDSWAMDEAAFSGYYDSSSPDGTGASSLATKNIVSERNRRKRLNERLFALRAVVPNISKMDKASIIKDAIEYIQRLQDQEKRIQAEISDLQSLNIKTPTYQFDHDLPILLRSKKNRTEQLFDSVSSRNSPIEIIELRVTHKEEKMFMVSLTCSKRTDTMVKLCEVFESLKLKVITATVTSFSGTISKTVFLEANTLIKVENPFCI 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g03774 226 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 45 114 - -
Pste6g03774 226 Pfam Helix-loop-helix DNA-binding domain 55 98 IPR011598 GO:0046983
Pste6g03774 226 Coils Coil 87 117 - -
Pste6g03774 226 SMART finulus 54 103 IPR011598 GO:0046983
Pste6g03774 226 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 97 IPR011598 GO:0046983
Pste6g03774 226 Gene3D - 46 115 IPR036638 GO:0046983
Pste6g03774 226 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 43 213 - -
Pste6g03774 226 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 50 114 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g03774 Pste-Chr6 26887230 26893146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g03774 3 213 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 58.605 8.89e-77 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste6g03774 HLH 7e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g03774 6 26887230 26893146 Pste6g03774 6 26887230 26893146 ECH
Pste6g03774 6 26887230 26893146 Pste2g01449 2 15773183 15774966 PCT