Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g03724 atggatatacttaaggagaagaagaaaaacacagggcgcaagaagattgagataaagaagcttgacaaggttagcaacaagcaagtcacgttctcaaaaagaagaacaggactgttcaaaaaagccagtgaactctgcattttgtgcaatgtttatatagctattattgtgttttctcctgctgacaaattgttctgctttggccatccagacataggagccattgttgatcgctatctcaaaggagccacagccacagccacagattttgaaccatcaaattcaaaacaaaaatcagtagtgtcatatgaagagtgcaacaagcaattagatgaggcaatgaccaagttggaaatcgaaaagaagaatctcacacaatctgtgattttggctaaaacttggaacagaaggtggtgggatgatccaattgatcagatgagtgatgatcagttggaacaatttatggtgtccatttacgagttaagaaaaaaattagcagaaagagcaggagaattgatgatgcttggagttatttag 537 0.0 MDILKEKKKNTGRKKIEIKKLDKVSNKQVTFSKRRTGLFKKASELCILCNVYIAIIVFSPADKLFCFGHPDIGAIVDRYLKGATATATDFEPSNSKQKSVVSYEECNKQLDEAMTKLEIEKKNLTQSVILAKTWNRRWWDDPIDQMSDDQLEQFMVSIYELRKKLAERAGELMMLGVI 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g03724 178 ProSiteProfiles MADS-box domain profile. 11 71 IPR002100 GO:0003677|GO:0046983
Pste6g03724 178 SUPERFAMILY SRF-like 12 87 IPR036879 GO:0003677|GO:0046983
Pste6g03724 178 CDD MADS_MEF2_like 12 82 IPR033896 GO:0000977|GO:0045944
Pste6g03724 178 SMART madsneu2 11 70 IPR002100 GO:0003677|GO:0046983
Pste6g03724 178 Coils Coil 100 127 - -
Pste6g03724 178 PRINTS MADS domain signature 33 48 IPR002100 GO:0003677|GO:0046983
Pste6g03724 178 PRINTS MADS domain signature 13 33 IPR002100 GO:0003677|GO:0046983
Pste6g03724 178 PRINTS MADS domain signature 48 69 IPR002100 GO:0003677|GO:0046983
Pste6g03724 178 FunFam Agamous-like MADS-box protein AGL62 23 89 - -
Pste6g03724 178 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 23 67 IPR002100 GO:0003677|GO:0046983
Pste6g03724 178 Gene3D - 24 92 IPR036879 GO:0003677|GO:0046983
Pste6g03724 178 PANTHER MADS BOX PROTEIN 13 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g03724 Pste-Chr6 26395362 26403094 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g03724 8 177 Type I MADS-box Gene Family AT5G60440 38.857 2.82e-37 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pste6g03724 SRF-TF 1.9e-21 No_clan