Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g03723 atgtcgaagaataaaaagtgtagcttaggtcggcaaaagatcccaattgagaaaataccgaaaaagagtcacttgcaagttacattctctaaacgtcgttcaggtttgttcaagaaagccagcgagctttgcaccctttgtggggtggagatcgcaattgtggttttctctcctgcggataaggcattctcttttggccatccagaggttgagtcccttattgatcgttacatgacacgaaacacttcacaaccacatgaatccagtgcgcaccacctcgtcgaggctcatcgtaacgctaatgttcgtgatctcaacatgcagctcacacagctttttaaccacttagagattgaaaagaagcaaggggaggatctagaccatcttagggaagccagacagagacaattttggtgggaaaatcccgttgatgaccttggtttgcatgaattacttcaactaaagggatctattctagacttgaaaaaccacatagaaaaatatgctaccaaattcacgttggaccactctaatactatatcttcatctgtttttgggcttaataatggacttgctccacttagacgttacgaaaccttcgaggacaaatctgctgttgggattgatgttgatattagtattgcttcctcacttcctaatgcccactatatcacttttctgaatgcctatcattga 696 0.0 MSKNKKCSLGRQKIPIEKIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEIAIVVFSPADKAFSFGHPEVESLIDRYMTRNTSQPHESSAHHLVEAHRNANVRDLNMQLTQLFNHLEIEKKQGEDLDHLREARQRQFWWENPVDDLGLHELLQLKGSILDLKNHIEKYATKFTLDHSNTISSSVFGLNNGLAPLRRYETFEDKSAVGIDVDISIASSLPNAHYITFLNAYH 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g03723 231 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Pste6g03723 231 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Pste6g03723 231 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Pste6g03723 231 PANTHER MADS BOX PROTEIN 11 166 - -
Pste6g03723 231 Gene3D - 21 90 IPR036879 GO:0003677|GO:0046983
Pste6g03723 231 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677|GO:0046983
Pste6g03723 231 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Pste6g03723 231 FunFam Agamous-like MADS-box protein AGL62 21 87 - -
Pste6g03723 231 SUPERFAMILY SRF-like 10 84 IPR036879 GO:0003677|GO:0046983
Pste6g03723 231 CDD MADS_MEF2_like 10 88 IPR033896 GO:0000977|GO:0045944
Pste6g03723 231 Gene3D - 91 192 - -
Pste6g03723 231 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g03723 Pste-Chr6 26392662 26393547 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g03723 6 190 Type I MADS-box Gene Family AT5G60440 47.917 2.08e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pste6g03723 SRF-TF 3.6e-23 No_clan