Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g03695 atggaagctgatgaagaatgcatcactgggctgtgtttgggactgggaatgggagggcatgttcccaaaaaggataagcagaaagagaacaagactgtgacatgcctagacctagcgtttgagctttgtccaaaaggggaagccattaacgtgaatcatgataaggtagagggaatcagtttggagagaatccatgaaggacacgattaccccaacgaaaagagcactgattctgataacagtaacaacaacaacaacagcggttgcagaaagaaactgaggctttccaaggaccagtcagccatgcttgagaacagtttcaaacttcatagcactcttaatccggtccagaaacaagcccttgctgatcaattgaatttaaaggctagacaggttgaagtttggtttcagaacagaagagcaaggtacgttatcgtatatagttag 447 0.0 MEADEECITGLCLGLGMGGHVPKKDKQKENKTVTCLDLAFELCPKGEAINVNHDKVEGISLERIHEGHDYPNEKSTDSDNSNNNNNSGCRKKLRLSKDQSAMLENSFKLHSTLNPVQKQALADQLNLKARQVEVWFQNRRARYVIVYS 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g03695 148 ProSiteProfiles 'Homeobox' domain profile. 86 146 IPR001356 GO:0003677
Pste6g03695 148 MobiDBLite consensus disorder prediction 64 88 - -
Pste6g03695 148 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 10 142 - -
Pste6g03695 148 CDD homeodomain 90 143 IPR001356 GO:0003677
Pste6g03695 148 Pfam Homeodomain 90 143 IPR001356 GO:0003677
Pste6g03695 148 SMART HOX_1 88 147 IPR001356 GO:0003677
Pste6g03695 148 Gene3D - 95 142 - -
Pste6g03695 148 SUPERFAMILY Homeodomain-like 69 143 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g03695 Pste-Chr6 26170892 26171795 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g03695 1 142 Homeobox Transcription Factor Family AT4G37790 40.113 2.90e-27 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Pste6g03695 Homeodomain 6.4e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g03695 6 26170892 26171795 Pste2g01404 2 15315074 15316574 PCT