Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g03686 atgcctctggaccttaatattgaagatcaaaaccacgagcttttcggtccaactcatcatgcctcctcttcgttttcttattctctgtcatcatcgtatcctattctcttcaacccccccgatcaagaacaacaacctggatcatactactggcaaccaacaaagcacttaccaagtgatgaagaggctgggaagattatccccaccagtggatcttcatgggatcactcggtgacagtttggaagaaagaaaagacgaatgaaaatcatgaagcagctgctgaagatggttcagtgagttggatgtcttcaaagatgagagtgatgcggaagatgatggtccctgatcaaactggtgcttatgttgcagaccacactacgaccaaggttgatgatcagaaacaaccactatcaccgcttggaactgataatagcagcagcaactattcaaaccacagtaataacactgttagggtttgtgctgattgtcacaccactaaaacccctctatggaggagtggaccaagaggccccaagtcactttgcaacgcctgtgggatccgacaaaggaaggccagacgcgccatggcagctgcggcagcagcatctggaaatggaagtgttattgtggaagctgagaaatctgtgaagggaaacaagttgcagaagaaagagaagaagttaagaattgagggtgcggcacatatgaagaagaagcgcaaacttggagttggagcaaaggcatctcaaaatagaaacaagtttggttttgaggatttgacattacgtttaaaaaagaacttggctatgcatcaagttttccctcaggacgagaaagaggctgcgatcctgctcatggctttatcttacggccttgttcatggatga 888 0.0 MPLDLNIEDQNHELFGPTHHASSSFSYSLSSSYPILFNPPDQEQQPGSYYWQPTKHLPSDEEAGKIIPTSGSSWDHSVTVWKKEKTNENHEAAAEDGSVSWMSSKMRVMRKMMVPDQTGAYVADHTTTKVDDQKQPLSPLGTDNSSSNYSNHSNNTVRVCADCHTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAAAASGNGSVIVEAEKSVKGNKLQKKEKKLRIEGAAHMKKKRKLGVGAKASQNRNKFGFEDLTLRLKKNLAMHQVFPQDEKEAAILLMALSYGLVHG 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g03686 295 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 9 295 - -
Pste6g03686 295 CDD ZnF_GATA 159 187 IPR000679 GO:0006355|GO:0043565
Pste6g03686 295 ProSitePatterns GATA-type zinc finger domain. 160 185 IPR000679 GO:0006355|GO:0043565
Pste6g03686 295 MobiDBLite consensus disorder prediction 132 154 - -
Pste6g03686 295 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 152 194 - -
Pste6g03686 295 MobiDBLite consensus disorder prediction 126 154 - -
Pste6g03686 295 FunFam GATA transcription factor 21 154 244 - -
Pste6g03686 295 ProSiteProfiles GATA-type zinc finger domain profile. 154 190 IPR000679 GO:0006355|GO:0043565
Pste6g03686 295 Gene3D - 155 254 IPR013088 GO:0006355|GO:0008270
Pste6g03686 295 SMART GATA_3 154 205 IPR000679 GO:0006355|GO:0043565
Pste6g03686 295 Pfam GATA zinc finger 160 193 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g03686 Pste-Chr6 26068173 26069921 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g03686 97 295 C2C2-Gata Transcription Factor Family AT4G26150 41.553 4.11e-36 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pste6g03686 GATA 3.7e-17 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g03686 6 26068173 26069921 Pste6g03686 6 26068173 26069921 ECH
Pste6g03686 6 26068173 26069921 Pste2g01388 2 15201510 15203536 PCT