Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g03623 atggtttggtttcaatgcgaagattgcggagacaacctcaaaaagcccaagttgccggctcactttcgaacatgctccgcctacaaattgtcctgcattgactgtggggagatatttgggcgtgacactgttcagaatcacacgcagtgtattaccgaagcggagaagtatggtccaaaaggtccaggcaaaaatttgaatgttgccactgccaatcctagcaaggacaatacgcaaaagcctgaagttgatattaatgtcgggttatctgagcagcctccttggttctgtagtctttgcaatacgaaagctacaagtaagcaaacccttcttctccatgctgatggaaagaaacacagagcaaaggccagagcattccatgcttcaaagcaacaaccagtccaggcagagaaatctaccactgatacaaaggttgctgtggggactgctcctaatgaagaggtgagagataacaaaaatggagaggtgccaaaattgcaagagtcttctaaacaaaataactcaaaaccagggaatgaaatatcattagcaacaaaaaagaggaaacttgaagcattagaggatgaccttattaaaaaaagcaggaatgactcttcagttgacatgggaaatggagaagtaattcagggtgaggaagcagcaggagagagcaatttgaagaaagaagggagtgctgtaaaaaataaaataaaatggaagaagttcatcaaaacagccttgaaatctcatcctgatggagttttgaagatgaagaaactgagaaaagctgtcctcaaagcattgcaggaatctggtattgtagtggttgaagctgaattgagtaagacgcttgagcagaagatcaattcaagctccagatttgcaattgagaacaagtatgtgcgattgctggccaaggattga 924 0.0 MVWFQCEDCGDNLKKPKLPAHFRTCSAYKLSCIDCGEIFGRDTVQNHTQCITEAEKYGPKGPGKNLNVATANPSKDNTQKPEVDINVGLSEQPPWFCSLCNTKATSKQTLLLHADGKKHRAKARAFHASKQQPVQAEKSTTDTKVAVGTAPNEEVRDNKNGEVPKLQESSKQNNSKPGNEISLATKKRKLEALEDDLIKKSRNDSSVDMGNGEVIQGEEAAGESNLKKEGSAVKNKIKWKKFIKTALKSHPDGVLKMKKLRKAVLKALQESGIVVVEAELSKTLEQKINSSSRFAIENKYVRLLAKD 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g03623 307 SUPERFAMILY beta-beta-alpha zinc fingers 30 58 IPR036236 -
Pste6g03623 307 ProSiteProfiles Zinc finger C2HC LYAR-type profile. 27 51 - -
Pste6g03623 307 PANTHER CELL GROWTH-REGULATING NUCLEOLAR PROTEIN LYAR 1 304 IPR039999 GO:0003677
Pste6g03623 307 MobiDBLite consensus disorder prediction 121 186 - -
Pste6g03623 307 MobiDBLite consensus disorder prediction 132 147 - -
Pste6g03623 307 Pfam LYAR-type C2HC zinc finger 30 57 IPR014898 -
Pste6g03623 307 FunFam UBP1-associated proteins 1C 89 132 - -
Pste6g03623 307 SUPERFAMILY beta-beta-alpha zinc fingers 1 26 IPR036236 -
Pste6g03623 307 Gene3D - 1 50 - -
Pste6g03623 307 Coils Coil 183 203 - -
Pste6g03623 307 SMART ZnF_U1_5 92 126 IPR003604 GO:0003676|GO:0008270
Pste6g03623 307 MobiDBLite consensus disorder prediction 165 181 - -
Pste6g03623 307 SUPERFAMILY beta-beta-alpha zinc fingers 83 127 IPR036236 -
Pste6g03623 307 Gene3D Classic Zinc Finger 72 125 - -
Pste6g03623 307 ProSiteProfiles Zinc finger C2HC LYAR-type profile. 1 26 - -
Pste6g03623 307 Pfam Zinc-finger of C2H2 type 95 119 - -
Pste6g03623 307 FunFam cell growth-regulating nucleolar protein-like 1 50 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g03623 79 229 C2H2 Transcription Factor Family AT2G19380 43.046 4.55e-20 88.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g03623 6 25347589 25351337 Pste6g03623 6 25347589 25351337 ECH