Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g03617 atgccatttatggcctgtagcgcatttgcttgcaataatttcctcttgtttctcttcaacaacttttctgcgccagtgaatattattgtaggttctcatgtctggattgaagatccagcacaagcatgggttgatggagaagtttctaaaatcaacggggaagaagtccatgtttgcaccacagatgggaaaacagttgtcaaaaatatctcaaaggtttttccaaaggataatgaagcccttcctggaggtgtagatgacatgacaaaattgtcttacttgcatgaaccaggagttctgcacaatttggcagctagatatgaactcaatgaaatttatacatatactggaaatatcctcattgcaataaatccttttcaaaggttaccgcatctatatgatactcacatgatggaacaatacaaaggagctgcatttggagaattgagtccccatgtttttgcagttgcagatgttgcatacagggcaatgattaatgagggaaaaagcaactcaatcctggttagtggtgagagtggggctggaaagacagagacaacaaaaatgcttatgcggtatcttgcatatcttgggggtcgatctggagtagaagggcggacagttgaacaacaagttctagaatcaaatccagttcttgaagcatttggcaatgccaaaacagttagaaacaacaactcaagtcgatttggtaaatttgttgagatacaatttgacaacaagggaagaatctctggagcagctatacggacatatttacttgaaaggtcccgagtctgtcaaatttcagatcctgaaagaaattaccattgcttttaccttctctgtgcagcaccagctgaggaaaaagagaagtataagctggaaaatcctagctcctttcattacttaaatcaatccaaatgctatgcactggatggagtggatgattctgaggaatatctagctactcgaagggcaatggatgttgttggaatcagtgaggaggagcaggaggctatttttagggtcattgcagcaattttgcatctcggaaatattgaatttgcaaaaggagaggatattgattcttctgtcatcaaggatgagaagtctaggttccatcttaatgtgactgctgaacttctaaagtgtgattgtaagagcttggaagatgcactgatccagcgtgtgatggtaacaccagaggaggttattacaagaacccttgatcctgttgcagctcttggtagcagggatgcattagctaaaaccatttattctcgtttgtttgattggctagttgaaaagattaacaattctattgggcaagatccaaattcaaaatctattattggagttcttgatatctatgggtttgaaagttttaagttcaatagttttgagcagttctgtattaattttacaaatgagaagctgcaacaacattttaatcagcatgtctttaaaatggaacaagaagaatacaccaaagaagaaatcaattggagttacatagagtttgttgacaaccaagatgttttagatctaattgagaagaaaccgggaggaataattgcacttcttgatgaagcctgtatgtttccaaagtctacacatgaaacatttgctcagaaattgtaccagacattcaaaaacaacaagcgcttcatcaaacctaaactctctcgaaccagttttaccatatcccattatgcaggggaggtgacgtatctagctgatatgtttcttgacaaaaacaaggattatgtagtggcagaacatcaggatctgctcacagcctcaaaatgctcatttgtggctggtctattccctccttctccagaggagtcttcaaaatcatcaaagttctcttcaataggatctcgcttcaagttacaacttcaatctttgatggagaccctgaattcaacagaacctcactatatcagatgtgtgaagccaaataatgttctcaagccggccatttttgaaaatctcaatattatccaacaattgcgctgtggtggtgttcttgaggcaattagaatcagctgtgctggatatcctacaagaagaaccttttatgagtttcttaatcgatttggtgttcttgcccctgaagttctggatggaaactacgatgacaaggttgcctgccaaatgatccttgataaaatgggtatgaaaggctatcagataggcaagacaaaagttttcctaagagctggccagatggctgaattagatgcaagaagagcagaggttcttggaaatgctgccagaatcatccagaggcaaatacgtacccatattgcacgcaaggaattcattgaattgcgccaagctgcaattcgtttgcaatctaatttgcgaggaatattgtctcggaagctttatgagcagttgcggcgtgaagcagcagctgtaaaagtacaaaagaacttcaaaggatatgttgccaggaaatcatatgtaatagcacgatcatctgcaattatactacagacaggtttaagggctatgaaagctcgtgatgaatttagatatagaaggcaaacgaaggctgcaatttacatccaggctcatttgcgtcggctaattgcatattcatattataaaagattgcaaaaggctgcagttgtttctcaatgtggttggagaagaagggttgctagaaaggaacttagaatgcttaaaatggctgcaagagaaacaggggccctcaaagaagctaaggacaaactagaaaagcgtgtagaagaacttacttggcgtttgcaaatcgagaagcgtttgagaactgatttggaggaggaaaaggctcaagaaatggttaagttacaggagtctttacaagcaatgcaaattcaagtagaagaagcaaatgccaaggtaatcaaagagcgtgaggcatcacgaaaggccattgaagaagcacctccagttattaaggaaactcctgttataattcaagatactgaaaagatcaactccttattggctgaagtcaatagtttgaaggaatcactgctattggaaaaagaagctaaagaagaggccagaaaagctcaggctgaggctgaagctagaaataaagagatggttaaaaaggttgaagattctgatcgcaaagtggatcaacttcaagaattggttcagaggttggaggaaaaagtttccaatgcagagtcagaaaatcaagttcttcgccagcaagcactggctgtatcaccaaccggaaaagctctgtctacaagaccaaggacagtgattattcagaggacacccgaaaatgggaatgctctaaatggtgaagcaaaaattggatcggatatgactcttgctatatccaatgtgcgtgagcctgaatctgaaggaaaaccacaaaaatctctcaatgagaagcagcaagaaaaccaggacttgttgatcaagtgcatatcacaagatttgggattttctgggggaaaacctgttgctgcatgtgtcatatataaatgccttcttcattggaggtcatttgaagttgaaaggacaactgtgtttgaccgaatcattcaaacaatagcttcagctgttgaggcccaggataatactgatgtgttagcctattggttatctaatacatctactttgctgttgctactccaacgcactcttaaagctagtggagctgctagcttaacaccacaacggcggagaacagcatcatcttctctgtttggaagaatgtctcaagggctaagggcatctcctcaaagtgctggactgtcatttctaaatggccgaggtcttaatagattggatgatttacgacaagtagaagcaaaatatccagcactgctgtttaagcagcagcttactgccttccttgaaaaaatatatggaatgataagagacaacctaaaaaaggagatttctccattacttggactgtgtatacaggctccaagaacctcacgtcaaagtttagtaaaaggacgtgcacaggcaaatgcagttgctcagcaagctttaattgctcactggcaaagtattgtaaaaagcttgaacagttatctgaagataatgaaagcaaactacgcacctcctttcttggtccgaaaagtgttcactcaaatattctcattcatcaatgttcaattattcaatagtcttctgttgcgacgggagtgttgttcgttcagcaatggggagtatgtaaaaacgggtctggctgaattagagcagtggtgtgttgaggcaacagaggagtatactggctctgcttgggaggaactgaaacatatcaggcaggctgttggattcctggttatacatcaaaaacccaagaagtccctgaatgaaattacaaaggagctttgtcctgttctaagtatacaacagttatacaggataagtacaatgtactgggatgacaaatacggcactcacagtgtgtcttcagacgttataacaaacatgagagctatgatgtcagaggactctaataatgctgtcagcacttctttcctattagatgatgattcgagcattccattttcggtggatgatatttccaaatcaatgcaacaagtagaagtagcggacgtggatcctccaccattgatacgtgagaactcaggatttgggttcttgctagcacgggcagagtga 4656 0.0 MPFMACSAFACNNFLLFLFNNFSAPVNIIVGSHVWIEDPAQAWVDGEVSKINGEEVHVCTTDGKTVVKNISKVFPKDNEALPGGVDDMTKLSYLHEPGVLHNLAARYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDNKGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCAAPAEEKEKYKLENPSSFHYLNQSKCYALDGVDDSEEYLATRRAMDVVGISEEEQEAIFRVIAAILHLGNIEFAKGEDIDSSVIKDEKSRFHLNVTAELLKCDCKSLEDALIQRVMVTPEEVITRTLDPVAALGSRDALAKTIYSRLFDWLVEKINNSIGQDPNSKSIIGVLDIYGFESFKFNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKNNKRFIKPKLSRTSFTISHYAGEVTYLADMFLDKNKDYVVAEHQDLLTASKCSFVAGLFPPSPEESSKSSKFSSIGSRFKLQLQSLMETLNSTEPHYIRCVKPNNVLKPAIFENLNIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLNRFGVLAPEVLDGNYDDKVACQMILDKMGMKGYQIGKTKVFLRAGQMAELDARRAEVLGNAARIIQRQIRTHIARKEFIELRQAAIRLQSNLRGILSRKLYEQLRREAAAVKVQKNFKGYVARKSYVIARSSAIILQTGLRAMKARDEFRYRRQTKAAIYIQAHLRRLIAYSYYKRLQKAAVVSQCGWRRRVARKELRMLKMAARETGALKEAKDKLEKRVEELTWRLQIEKRLRTDLEEEKAQEMVKLQESLQAMQIQVEEANAKVIKEREASRKAIEEAPPVIKETPVIIQDTEKINSLLAEVNSLKESLLLEKEAKEEARKAQAEAEARNKEMVKKVEDSDRKVDQLQELVQRLEEKVSNAESENQVLRQQALAVSPTGKALSTRPRTVIIQRTPENGNALNGEAKIGSDMTLAISNVREPESEGKPQKSLNEKQQENQDLLIKCISQDLGFSGGKPVAACVIYKCLLHWRSFEVERTTVFDRIIQTIASAVEAQDNTDVLAYWLSNTSTLLLLLQRTLKASGAASLTPQRRRTASSSLFGRMSQGLRASPQSAGLSFLNGRGLNRLDDLRQVEAKYPALLFKQQLTAFLEKIYGMIRDNLKKEISPLLGLCIQAPRTSRQSLVKGRAQANAVAQQALIAHWQSIVKSLNSYLKIMKANYAPPFLVRKVFTQIFSFINVQLFNSLLLRRECCSFSNGEYVKTGLAELEQWCVEATEEYTGSAWEELKHIRQAVGFLVIHQKPKKSLNEITKELCPVLSIQQLYRISTMYWDDKYGTHSVSSDVITNMRAMMSEDSNNAVSTSFLLDDDSSIPFSVDDISKSMQQVEVADVDPPPLIRENSGFGFLLARAE 1551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g03617 1551 CDD MYSc_Myo11 97 741 IPR036018 -
Pste6g03617 1551 FunFam Class V myosin 460 601 - -
Pste6g03617 1551 CDD MyosinXI_CBD 1134 1517 IPR037975 GO:0007015
Pste6g03617 1551 Gene3D - 273 331 - -
Pste6g03617 1551 Gene3D Kinesin motor domain 86 683 IPR036961 -
Pste6g03617 1551 Gene3D - 854 903 - -
Pste6g03617 1551 Gene3D - 807 853 - -
Pste6g03617 1551 Gene3D - 756 806 - -
Pste6g03617 1551 ProSiteProfiles Dilute domain profile. 1183 1494 IPR002710 -
Pste6g03617 1551 FunFam unconventional myosin-Va 758 806 - -
Pste6g03617 1551 ProSiteProfiles IQ motif profile. 827 856 IPR000048 GO:0005515
Pste6g03617 1551 ProSiteProfiles IQ motif profile. 804 830 IPR000048 GO:0005515
Pste6g03617 1551 Coils Coil 1000 1072 - -
Pste6g03617 1551 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 54 806 IPR027417 -
Pste6g03617 1551 Gene3D - 32 76 IPR008989 GO:0003774|GO:0005524|GO:0051015
Pste6g03617 1551 PANTHER MYOSIN 79 1482 - -
Pste6g03617 1551 FunFam unconventional myosin-Va 855 902 - -
Pste6g03617 1551 SMART DIL_2 1369 1476 IPR002710 -
Pste6g03617 1551 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 29 78 IPR004009 GO:0003774|GO:0005524|GO:0016459
Pste6g03617 1551 SMART MYSc_2a 77 754 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pste6g03617 1551 FunFam Myosin 2 333 448 - -
Pste6g03617 1551 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 806 904 IPR027417 -
Pste6g03617 1551 ProSiteProfiles IQ motif profile. 875 904 IPR000048 GO:0005515
Pste6g03617 1551 Pfam DIL domain 1370 1473 IPR002710 -
Pste6g03617 1551 FunFam unconventional myosin-Va 807 854 - -
Pste6g03617 1551 PRINTS Myosin heavy chain signature 450 478 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pste6g03617 1551 PRINTS Myosin heavy chain signature 503 531 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pste6g03617 1551 PRINTS Myosin heavy chain signature 113 132 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pste6g03617 1551 PRINTS Myosin heavy chain signature 170 195 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pste6g03617 1551 PRINTS Myosin heavy chain signature 217 244 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pste6g03617 1551 ProSiteProfiles IQ motif profile. 779 808 IPR000048 GO:0005515
Pste6g03617 1551 ProSiteProfiles IQ motif profile. 852 878 IPR000048 GO:0005515
Pste6g03617 1551 ProSiteProfiles IQ motif profile. 758 782 IPR000048 GO:0005515
Pste6g03617 1551 Pfam Myosin head (motor domain) 85 741 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pste6g03617 1551 SMART iq_5 803 825 IPR000048 GO:0005515
Pste6g03617 1551 SMART iq_5 826 848 IPR000048 GO:0005515
Pste6g03617 1551 SMART iq_5 755 777 IPR000048 GO:0005515
Pste6g03617 1551 SMART iq_5 874 896 IPR000048 GO:0005515
Pste6g03617 1551 SMART iq_5 778 800 IPR000048 GO:0005515
Pste6g03617 1551 SMART iq_5 851 873 IPR000048 GO:0005515
Pste6g03617 1551 FunFam Myosin XI D 688 751 - -
Pste6g03617 1551 FunFam Myosin heavy chain 273 328 - -
Pste6g03617 1551 Gene3D Myosin VI head, motor domain, U50 subdomain 333 622 - -
Pste6g03617 1551 ProSiteProfiles Myosin motor domain profile. 83 753 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pste6g03617 1551 Coils Coil 898 978 - -
Pste6g03617 1551 Pfam Myosin N-terminal SH3-like domain 30 67 IPR004009 GO:0003774|GO:0005524|GO:0016459
Pste6g03617 1551 Gene3D - 688 751 - -
Pste6g03617 1551 Gene3D - 460 644 - -
Pste6g03617 1551 Pfam IQ calmodulin-binding motif 806 824 IPR000048 GO:0005515
Pste6g03617 1551 Pfam IQ calmodulin-binding motif 758 776 IPR000048 GO:0005515
Pste6g03617 1551 Pfam IQ calmodulin-binding motif 780 799 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g03617 Pste-Chr6 25289174 25305364 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g03617 88 1551 Myosins gene family AT5G20490 83.333 0.0 2536
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g03617 6 25289174 25305364 Pste6g03617 6 25289174 25305364 ECH