Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g03614 atggacggtggagcgcactacaaccctcgcaccgttgaagaggttttccgggacttcaagggccgtagagccggcatgatcaaggctctcaccaccgaaaaggataatctttgtctatacgggttccctaatgagcaatgggaagttaatttacctgcagaagaagttccaccagaacttcccgagcctgcattgggcataaactttgctagggatgggatgcaagacaaggactggctctctttggttgctgttcacagtgatgcatggttactctcagtggctttctactttggagcacggtttggttttgataaagcagatagagctttgagtatttctcccactcctagtctcccgtggcttctccagatctgcatccgcatcaccacaccatggcctttggttccccagatctgcttccacattgccacaccacatccctttggctctatgttctttggaggaagaagaccaagacctcaagagttatgtgatttcttgcaagaaatgatttcagaagagtttggactgatggatacccaaatagaatttgtgaatcattccagagtgacttttcagttttctgattttttctttttcagtattctaagacctaaatacctgacctcaaccaacccagtagagaccaggaaacgcctgttcactatgattaatgatttaccaacaatatttgaggttgtgactggaagtgcaaaaaaacagactaaggaaaagtcgtccatttcaaacaacaccagcaacaaatcaaaatccagttcaaaagggcgaggatctgaaaccggaaagtattcaaagcaaacaaaggacgaggaggatgagctactggatgaagatgaagatgaggaagaggagcatggggagacactgtgtggtgcatgtggggagaactatgcatctgatgagttctggatttgttgtgacatatgtgagaagtggttccatggcaagtgtgtgaagatcactcctgccagggctgagcacattaagcagtataagactatgggtcttgtgaacttagtggatatattttttaatagtgatagtttgcagatttatggtctacctaaggttagcagtgttgcatctgcgcaagctttggaaaaactggctgaacagaactgtttgatgaatggccaaataacgggacattgtctgggattaggatcacctgcagtttaa 1203 0.0 MDGGAHYNPRTVEEVFRDFKGRRAGMIKALTTEKDNLCLYGFPNEQWEVNLPAEEVPPELPEPALGINFARDGMQDKDWLSLVAVHSDAWLLSVAFYFGARFGFDKADRALSISPTPSLPWLLQICIRITTPWPLVPQICFHIATPHPFGSMFFGGRRPRPQELCDFLQEMISEEFGLMDTQIEFVNHSRVTFQFSDFFFFSILRPKYLTSTNPVETRKRLFTMINDLPTIFEVVTGSAKKQTKEKSSISNNTSNKSKSSSKGRGSETGKYSKQTKDEEDELLDEDEDEEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKTMGLVNLVDIFFNSDSLQIYGLPKVSSVASAQALEKLAEQNCLMNGQITGHCLGLGSPAV 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g03614 400 Pfam PHD-finger 298 337 IPR019787 -
Pste6g03614 400 Coils Coil 272 292 - -
Pste6g03614 400 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 342 IPR013083 -
Pste6g03614 400 FunFam PHD finger alfin-like protein 290 343 - -
Pste6g03614 400 SUPERFAMILY FYVE/PHD zinc finger 286 339 IPR011011 -
Pste6g03614 400 CDD PHD_AL_plant 297 340 IPR044104 -
Pste6g03614 400 MobiDBLite consensus disorder prediction 243 290 - -
Pste6g03614 400 Pfam Alfin 11 111 IPR021998 GO:0006355|GO:0042393
Pste6g03614 400 PANTHER CPG BINDING PROTEIN 8 341 IPR045104 GO:0006355|GO:0042393
Pste6g03614 400 MobiDBLite consensus disorder prediction 243 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g03614 Pste-Chr6 25266209 25270075 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g03614 218 262 Alfin-like Transcription Factor Family AT5G20510 64.444 2.60e-12 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Pste6g03614 Alfin 2.7e-46 No_clan