Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g03611 atggacggtggagcgcactacaaccctcgcaccgttgaagaggttttccgggacttcaagggccgtagagccggcatgatcaaggctctcaccaccgatgtggaagagtttttccagcagtgcgatcctgaaaaagataatctttgtctctacgggttccctagtgagcaatgggaagttaatttacctgcagaagaagttcctccagaacttccagagccggcattgggcataaactttgctagggatgggatgcaagacaaggactggctgtctttggttgccgttcacagtgattcatggttacttgcagtggctttctactttggagcgcgatttggttttgataaagcagataggcgggtgagggctttgcctgtttctgcttttggtggattgggaagccaaatgacgttttcattgactcccatgtacgatttctttggaggaagaagaccaagagttatgaaacgtatgttcactatgattaatgatttacccacagtatttgaggttgtgactgggagtgaaaaaaaacagactaaggaaaagtcgtccatttctaaccacaccagcaacaaaaaattcagtttaaaagggcgagaatctgaatccgtgaagtattcaaagcaaactaaggatgaagaggatgaggtactggatgaagaagacattgaggagcatggggagacactgtgtggtgcatgtggggagaactatgcatctgatgagttctggatttgttgtgacatatgtgagaaatggttccatggcaagtgtgtgaagatcactcctgccagggccgagcatattaagcagtataagtgcccctcatgcagcaataagagagctcggccttga 861 0.0 MDGGAHYNPRTVEEVFRDFKGRRAGMIKALTTDVEEFFQQCDPEKDNLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQDKDWLSLVAVHSDSWLLAVAFYFGARFGFDKADRRVRALPVSAFGGLGSQMTFSLTPMYDFFGGRRPRVMKRMFTMINDLPTVFEVVTGSEKKQTKEKSSISNHTSNKKFSLKGRESESVKYSKQTKDEEDEVLDEEDIEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g03611 286 FunFam PHD finger alfin-like protein 225 281 - -
Pste6g03611 286 ProSitePatterns Zinc finger PHD-type signature. 233 279 IPR019786 -
Pste6g03611 286 Pfam Alfin 11 121 IPR021998 GO:0006355|GO:0042393
Pste6g03611 286 PANTHER CPG BINDING PROTEIN 8 285 IPR045104 GO:0006355|GO:0042393
Pste6g03611 286 Pfam PHD-finger 233 282 IPR019787 -
Pste6g03611 286 CDD PHD_AL_plant 232 282 IPR044104 -
Pste6g03611 286 SUPERFAMILY FYVE/PHD zinc finger 222 283 IPR011011 -
Pste6g03611 286 MobiDBLite consensus disorder prediction 181 200 - -
Pste6g03611 286 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 223 281 IPR013083 -
Pste6g03611 286 ProSiteProfiles Zinc finger PHD-type profile. 230 282 IPR019787 -
Pste6g03611 286 SMART PHD_3 232 280 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g03611 Pste-Chr6 25253669 25257516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g03611 1 285 Alfin-like Transcription Factor Family AT3G42790 63.066 7.22e-111 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Pste6g03611 Alfin 3.3e-59 No_clan