Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g03608 atgtacaattgttcacaagtggattgcaatcactcgatggctcatactccgtatccttgtggtgatccttattttggtagttcattaattacttatggaccacagactattagtcaacctcaactgctaccccagattctgggattagcatccaccagaattgcattaccagatgagcttgcagaggatggacccatttatgtcaatgcaaaacaataccatggaatattgagaaggcgacagtcacgagcaaagcttgaggctcaaaacaaactcatcaaaagtcgtaagccatatcttcacgagtctcggcaccgccatgcattgaatagggttaggggatctgggggacgctttctaagtgccaaacagctgcaacagtctaaatcagaaattgtcactgatgctcatttaggcccagattctgtctacgtttatcaaaagaaagatgcatcagacgtggaaagtcacccctcaagatctagggaaaatacatctatctccgccatgtctggcttaacaatgtccagtaacagtgtcaatttcaggcagcccgagcacaacttcttggggagctcccccaacataggtggatcctcacaatgcagtgggggactcacctttggtggtggagctcggcaatgtgcttcagttggccgttga 663 0.0 MYNCSQVDCNHSMAHTPYPCGDPYFGSSLITYGPQTISQPQLLPQILGLASTRIALPDELAEDGPIYVNAKQYHGILRRRQSRAKLEAQNKLIKSRKPYLHESRHRHALNRVRGSGGRFLSAKQLQQSKSEIVTDAHLGPDSVYVYQKKDASDVESHPSRSRENTSISAMSGLTMSSNSVNFRQPEHNFLGSSPNIGGSSQCSGGLTFGGGARQCASVGR 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g03608 220 PRINTS CCAAT-binding transcription factor subunit B signature 65 87 IPR001289 GO:0003700|GO:0006355
Pste6g03608 220 PRINTS CCAAT-binding transcription factor subunit B signature 96 119 IPR001289 GO:0003700|GO:0006355
Pste6g03608 220 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 3 181 IPR001289 GO:0003700|GO:0006355
Pste6g03608 220 ProSiteProfiles NF-YA/HAP2 family profile. 62 122 IPR001289 GO:0003700|GO:0006355
Pste6g03608 220 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 65 119 IPR001289 GO:0003700|GO:0006355
Pste6g03608 220 ProSitePatterns NF-YA/HAP2 subunit signature. 67 87 IPR018362 GO:0003677|GO:0016602
Pste6g03608 220 Gene3D - 62 124 - -
Pste6g03608 220 MobiDBLite consensus disorder prediction 149 169 - -
Pste6g03608 220 SMART cbf3 61 122 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g03608 Pste-Chr6 25218504 25220619 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g03608 33 134 CCAAT-HAP2 Transcription Factor Family AT1G54160 61.538 1.24e-39 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Pste6g03608 CBFB_NFYA 2.8e-27 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g03608 6 25218504 25220619 Pste6g03608 6 25218504 25220619 ECH