Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g03606 atgcttacgtgcatagctcgtccgaaaaaacccgatgagtcggatccaaataacgcgacaagcgccgcaaaatcgcaagccataaaatccctcacttctcagataagggatatggcgttgaaggcttcgggagcgtacaagcattgcgctccatgcacggggccagcggtgcaggggcgagtgaggagcaccgccgagtcggacgcagattcggaccggttccggtggtcgtaccggcgaacgggaagttcgagctctacgacgacgcggacgtgggggaaggagatggaggcgcgactgaaggggatttcgagcggggaggggacgccgaattcagccagcggacggcgggcggagccggtggtactattcgttgaagagaacgagccgaaggagtgggtggcgcaggtggagcccggcgttctgattacgttcgtgtcgttgccacgtggcgggaacgatctgaaacgcatacggttcagtagcggtggtgtggttgttttctttggcgttgggggttttgatccgactttgagtgcgatgattagtcgctgtttggatcgtctagacagtgatgatgacaacgagtgccttttgctacggtcgatagtcaattttgcacacctcacttgtagggtcgttttcatctttgctcctttgctttgcctatgtttagttcctacgatgacatcaggacaagagagaagtgaattgaattttggtttattttctattgtgtatagtcgagagatgttcaataaatggcaagctcaaaggtggtgggcagagaactacgacaaggttatggaactttacaacgttcaaaggtttaaccgtcaagcattccctcttccaacgccaccacgatcagaagatgagagctcaaagcttgaatcagcagaagaaagccctgtaacacctccactgaccagggaacgattgcctcgtaatatacaccgtccaacagggatgggaatgggatactcatcctcagattcatttgatcatcaatcaatgcaatcccggcaattctatgactcaaatgctatgaactcaacaccaaaagtgtccacgattagtgcggctaagacggagatatcatcaatggatgcttctattagaagtagctcatcgagagaggctgatcgctcaggtgatttatcaatcagcaatgctagtgatttggagaccgaatgggtcgaacaggatgaacctggggtttacatcacaatcagagcattgccaggtggagctagggagctaaaacgagtcaggttcagaactctttgtaatttatttcttggtgttctcatgtattacacagccgagaaagatttggggagatgcatgctagattatggtgggaggagaaccgtgccagaatacatgaacaatacttgtgagattttacaaaggggtggttgctga 1428 0.0 MLTCIARPKKPDESDPNNATSAAKSQAIKSLTSQIRDMALKASGAYKHCAPCTGPAVQGRVRSTAESDADSDRFRWSYRRTGSSSSTTTRTWGKEMEARLKGISSGEGTPNSASGRRAEPVVLFVEENEPKEWVAQVEPGVLITFVSLPRGGNDLKRIRFSSGGVVVFFGVGGFDPTLSAMISRCLDRLDSDDDNECLLLRSIVNFAHLTCRVVFIFAPLLCLCLVPTMTSGQERSELNFGLFSIVYSREMFNKWQAQRWWAENYDKVMELYNVQRFNRQAFPLPTPPRSEDESSKLESAEESPVTPPLTRERLPRNIHRPTGMGMGYSSSDSFDHQSMQSRQFYDSNAMNSTPKVSTISAAKTEISSMDASIRSSSSREADRSGDLSISNASDLETEWVEQDEPGVYITIRALPGGARELKRVRFRTLCNLFLGVLMYYTAEKDLGRCMLDYGGRRTVPEYMNNTCEILQRGGC 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g03606 475 MobiDBLite consensus disorder prediction 282 335 - -
Pste6g03606 475 ProSiteProfiles BRX domain profile. 397 454 IPR013591 -
Pste6g03606 475 MobiDBLite consensus disorder prediction 367 388 - -
Pste6g03606 475 MobiDBLite consensus disorder prediction 1 27 - -
Pste6g03606 475 Pfam Transcription factor BRX N-terminal domain 20 52 IPR027988 -
Pste6g03606 475 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 427 IPR044532 -
Pste6g03606 475 Pfam Transcription factor regulating root and shoot growth via Pin3 131 161 IPR013591 -
Pste6g03606 475 Pfam Transcription factor regulating root and shoot growth via Pin3 245 272 IPR013591 -
Pste6g03606 475 Pfam Transcription factor regulating root and shoot growth via Pin3 396 427 IPR013591 -
Pste6g03606 475 ProSiteProfiles BRX domain profile. 131 190 IPR013591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g03606 Pste-Chr6 25173166 25178629 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g03606 242 426 Major Intrinsic Protein MIP AT1G31880 45.550 2.49e-38 141
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g03606 6 25173166 25178629 Pste6g03606 6 25173166 25178629 ECH
Pste6g03606 6 25173166 25178629 Pste2g01301 2 14311887 14314640 PCT