Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g03600 atgggtgatacgcaagggcccataatagtgtcagcccctccttgggaaaagacgagcacaagcatggtatattatgggctaatagtggtgggggtagcggccatgtcattagcagtgtacaacttgatcatggtgaggcgaagcagaagaggggtggaagggagaataaaggggtgccaaaggaacttgaaaatggtctcaagtttcaagtacaagaaagaaggatatgaaaatgatggtgaatgtacggtatgcttatcgggttttgaagaaggggaacaagtgaagaagctgccacggtgcaaccactgcttccacgctccctgcatagacatgtggctatactctcatttcgattgcccaatttgtcgaacacctgttgctcaccatgaatga 396 0.0 MGDTQGPIIVSAPPWEKTSTSMVYYGLIVVGVAAMSLAVYNLIMVRRSRRGVEGRIKGCQRNLKMVSSFKYKKEGYENDGECTVCLSGFEEGEQVKKLPRCNHCFHAPCIDMWLYSHFDCPICRTPVAHHE 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g03600 131 ProSiteProfiles Zinc finger RING-type profile. 82 124 IPR001841 -
Pste6g03600 131 SUPERFAMILY RING/U-box 68 128 - -
Pste6g03600 131 SMART ring_2 82 123 IPR001841 -
Pste6g03600 131 CDD RING-H2_EL5-like 81 124 - -
Pste6g03600 131 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 27 127 IPR044675 -
Pste6g03600 131 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 131 IPR013083 -
Pste6g03600 131 Pfam Ring finger domain 81 124 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g03600 Pste-Chr6 25106544 25107371 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g03600 63 128 C3H Transcription Factor Family AT5G17600 50.746 1.30e-20 84.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g03600 6 25106544 25107371 Pste6g03600 6 25106544 25107371 ECH