Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g03595 atggggagaaggccttgttgttcaaaggagggtttgaatagaggtgcttggactgctcatgaagacaaaattctgaaagaatacattaaggtccacggtgaaggaagatggagaaaccttcctaaaagagcaggcttgaagagatgtggaaaaagttgcagacttcgatggttgaattatctgagaccagatatcaagagaggcaatatatcctcagatgaagaagagctcatcatcaggctccacaagctcctcggaaacagatggtctttaatagcggggagacttccaggacgaacagacaatgaaataaagaattattggaacaccaatttaggaaaaaaggttaaagatgggaaccaaagtagtagttgctctcagaatccaatggccactgttcctattcctagacaagattccaacgttgtccgtgcaaaggctagcaagtgctctaaggtggtattcataaacccaaagccacaaatgcaaatgcaaatgcaaatgcaaataggcaacacagaggcagagacagcggtaatggaaggcagtggaaacgacaatgggtttgtgtcgtttccgaatggagaaacagatatgctgatagatttcaacgtgggagatgtgtgcttgtcggagcttctgaacgaggagctgctacctgatgggatgttctctgatgaacttcttaaggaatgggctcaaacaaattttgcagaccaagacaatgcttccaccaaccttcattctctcatttcattccttgaatccactgaggaaacacaaacactaggacaatcgtaa 801 0.0 MGRRPCCSKEGLNRGAWTAHEDKILKEYIKVHGEGRWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISSDEEELIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTNLGKKVKDGNQSSSCSQNPMATVPIPRQDSNVVRAKASKCSKVVFINPKPQMQMQMQMQIGNTEAETAVMEGSGNDNGFVSFPNGETDMLIDFNVGDVCLSELLNEELLPDGMFSDELLKEWAQTNFADQDNASTNLHSLISFLESTEETQTLGQS 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g03595 266 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pste6g03595 266 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 173 - -
Pste6g03595 266 CDD SANT 16 61 IPR001005 -
Pste6g03595 266 Gene3D - 70 133 - -
Pste6g03595 266 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pste6g03595 266 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pste6g03595 266 SMART sant 13 63 IPR001005 -
Pste6g03595 266 SMART sant 66 114 IPR001005 -
Pste6g03595 266 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pste6g03595 266 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Pste6g03595 266 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pste6g03595 266 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pste6g03595 266 FunFam Transcription factor TT2 70 138 - -
Pste6g03595 266 CDD SANT 71 112 IPR001005 -
Pste6g03595 266 FunFam MYB-related transcription factor 13 66 - -
Pste6g03595 266 Gene3D - 14 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g03595 Pste-Chr6 25057378 25058669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g03595 5 116 MYB Transcription Factor Family AT3G13540 75.893 4.10e-61 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pste6g03595 Myb_DNA-binding 7e-14 CL0123