Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g03574 atgtcgcagtctggaagcgcgtggaaggtgcttacggcattccaaaggcacgaaggggacttgtttcagatgacaattgcatggggaacaatcttctctagttgttttaggagcgagtccgtgtcaccttctcccaagcccaccaaggtggtggccacaaaggattcttcttccaacagggtctccataacggacttgagttatcctggctcaactctttccgaggatctttccatttctctagcgggctctaacctccatgttttttcactcgccgagctcaagatcatcacacagagtttctcttccagtaactttctcggagaaggaggtttcggacccgtgcataagggcttcattgatgataagctcaggcctggtctccatgctcaacccgtcgccgtcaagctcttggacttggacggtactcagggccataaagagtggttgactgaagttgtgtttcttggtcaactgagccatcagcatctcgtgaagttgattggatattgctgtgaagaagaacacaggcttctggtatatgaatatttaccacgaggcagcttagagaatcaactatttagaagatttacggcatcgttaccatggtcaacaagaatgaaaattgcagctggagctgcaaagggtctagcctttctacatgaagcaaagaaacctgtcatctatagagatttcaaagcttcaaacatcttgttagactcagattacaatgcaaagctttctgattttgggttggcaaaagatggtcccgaaggagatgacacacacgtttcaacaagagtgatgggcacacaaggatatgcagctccggaatacatcatgacaggacacttgacagcaatgagtgatgtgtacagttttggagttgttctgttggagctgctgacgggaagaaggtcagtggacaaagggcgcccaccaagagaacagaacctggtggaatgggcgaggcctgttttgaatgattcccggaaacttagccgaataatggatccaagacttgagggtcagtattctgaggaaggggcaagaaaagcagctgcattggcttaccaatgcctcagccacaggccaagaagtagacccttgatgagcactgtggttaaggttcttgagccacttaaggactttcatgatgttccaattggaccctttgtttacactgttcctcctgaacgcaatgaaatgtcaaaagagagtgagacacctaaggagaggaagagggaaaatggacatcaccatcaccggagtcatcatcacaataacagtggagaaaaacatcatgatcatgatgaagtcaataaagatgcaaatggtcgccgaaatcatcgtcatcgccataatggtcatagccatagacatcatccacttaaatcgcccaagacaccaaagccatcagagtcacagaatgatgaaccccgaaatggtagaagtggatcgaactcacccgacaccgccattgcatcagaaacgcaaggaagcgtatga 1509 0.0 MSQSGSAWKVLTAFQRHEGDLFQMTIAWGTIFSSCFRSESVSPSPKPTKVVATKDSSSNRVSITDLSYPGSTLSEDLSISLAGSNLHVFSLAELKIITQSFSSSNFLGEGGFGPVHKGFIDDKLRPGLHAQPVAVKLLDLDGTQGHKEWLTEVVFLGQLSHQHLVKLIGYCCEEEHRLLVYEYLPRGSLENQLFRRFTASLPWSTRMKIAAGAAKGLAFLHEAKKPVIYRDFKASNILLDSDYNAKLSDFGLAKDGPEGDDTHVSTRVMGTQGYAAPEYIMTGHLTAMSDVYSFGVVLLELLTGRRSVDKGRPPREQNLVEWARPVLNDSRKLSRIMDPRLEGQYSEEGARKAAALAYQCLSHRPRSRPLMSTVVKVLEPLKDFHDVPIGPFVYTVPPERNEMSKESETPKERKRENGHHHHRSHHHNNSGEKHHDHDEVNKDANGRRNHRHRHNGHSHRHHPLKSPKTPKPSESQNDEPRNGRSGSNSPDTAIASETQGSV 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g03574 502 SUPERFAMILY Protein kinase-like (PK-like) 76 379 IPR011009 -
Pste6g03574 502 FunFam Probable serine/threonine-protein kinase PBL8 184 392 - -
Pste6g03574 502 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Pste6g03574 502 Pfam Protein tyrosine and serine/threonine kinase 105 378 IPR001245 GO:0004672|GO:0006468
Pste6g03574 502 CDD STKc_IRAK 107 381 - -
Pste6g03574 502 MobiDBLite consensus disorder prediction 401 415 - -
Pste6g03574 502 Gene3D Phosphorylase Kinase; domain 1 69 183 - -
Pste6g03574 502 MobiDBLite consensus disorder prediction 447 466 - -
Pste6g03574 502 PANTHER OS01G0588500 PROTEIN-RELATED 59 382 - -
Pste6g03574 502 ProSiteProfiles Protein kinase domain profile. 101 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste6g03574 502 MobiDBLite consensus disorder prediction 416 430 - -
Pste6g03574 502 FunFam Serine/threonine-protein kinase BIK1 70 183 - -
Pste6g03574 502 MobiDBLite consensus disorder prediction 479 502 - -
Pste6g03574 502 Gene3D Transferase(Phosphotransferase) domain 1 184 387 - -
Pste6g03574 502 MobiDBLite consensus disorder prediction 431 446 - -
Pste6g03574 502 MobiDBLite consensus disorder prediction 388 502 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g03574 Pste-Chr6 24772730 24776438 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g03574 87 415 Glycoside Hydrolase AT3G07070 51.198 9.42e-105 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Pste6g03574 PK_Tyr_Ser-Thr 3.9e-45 CL0016