LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste6g03552	atgatggtgaagccaggaagcgaaaaggcagaggagcacaaggattccaagtacaaaggggtccgaaagagaaaatggggcaaatgggtatccgaaataagactccccaacagtcgccagaggatttggttgggatcctacgacacccccgagaaggccgcgcgtgccttcgacgcggctatgttctgtttgcgtggccgcaacgccaacttcaatttcccagacaacccacccaacatcgccggcgggaggaacatgacgtcgttggaaattcaggccgcggcggcgcaattcgcgaacgcagggccccacgagggtcattcgggtcgacccgaacattcgcacatggagtctccatctccttctgtttcggaggggacagttcaaacggacagcgatgtgaccacgcttaatggttcactgacggatttgttcacgcccctggccgttgggcccagtaattacgcatctgattacgggattttccccggttttgatgagttcactggtgatttctatgtgccggaaatgtctaatgttaattacggagaagaaaacgttgaagggatcatagccgatgagtctttcttgtggaatttctga	603	0.0	MMVKPGSEKAEEHKDSKYKGVRKRKWGKWVSEIRLPNSRQRIWLGSYDTPEKAARAFDAAMFCLRGRNANFNFPDNPPNIAGGRNMTSLEIQAAAAQFANAGPHEGHSGRPEHSHMESPSPSVSEGTVQTDSDVTTLNGSLTDLFTPLAVGPSNYASDYGIFPGFDEFTGDFYVPEMSNVNYGEENVEGIIADESFLWNF	200

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste6g03552	200	PRINTS	Ethylene responsive element binding protein signature	18	29	IPR001471	GO:0003700\|GO:0006355
	Pste6g03552	200	PRINTS	Ethylene responsive element binding protein signature	40	56	IPR001471	GO:0003700\|GO:0006355
	Pste6g03552	200	ProSiteProfiles	AP2/ERF domain profile.	17	74	IPR001471	GO:0003700\|GO:0006355
	Pste6g03552	200	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED	11	129	-	-
	Pste6g03552	200	FunFam	Ethylene-responsive transcription factor 2	16	75	-	-
	Pste6g03552	200	SUPERFAMILY	DNA-binding domain	16	75	IPR016177	GO:0003677
	Pste6g03552	200	CDD	AP2	16	76	IPR001471	GO:0003700\|GO:0006355
	Pste6g03552	200	MobiDBLite	consensus disorder prediction	101	135	-	-
	Pste6g03552	200	MobiDBLite	consensus disorder prediction	115	135	-	-
	Pste6g03552	200	Pfam	AP2 domain	16	66	IPR001471	GO:0003700\|GO:0006355
	Pste6g03552	200	Gene3D	AP2/ERF domain	16	75	IPR036955	GO:0003700\|GO:0006355
	Pste6g03552	200	SMART	rav1_2	17	80	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste6g03552	Pste-Chr6	24555116	24561076	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste6g03552	8	200	AP2-EREBP Transcription Factor Family	AT1G19210	52.525	8.83e-62	188

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Pste6g03552		AP2	2.9e-14	CL0081