Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g03542 atgcagccacagaggttaaggcagcatgccatgatgcaaccctctctctaccaccaccccgctctccttactcctcctcagatagagcctatcttgagtggaaatctgccacctggctttgattcgagtacatgccgcagtgtatatgttggcaacattcatccccaggtcaccgaaggccttcttcaagagcttttttctactgcaggcgcccttgaaggatgcaagcttattaggaaagagaagtcatcctatggctttgttgactactttgatcgcagttctgctgcatttgctattgtaactctcaatgggaggaatatttttgggcagcctattaaggttaactgggcttatgctagcagccagagagaggatacctcaggtgatattcttgcagaccatgtactcattgaggatgcccaaggtgctataaatgatttgactggaaaatggcttggaagtagacagattcgctgtaattgggcaaccaaaggggccaatgccggtgatgaaaagcagatttcagattctaaaagtgtcgtggatttgactaatggaacatccgatgaaagccaggaaataaccaatgatgatgttcccgagaagaatcctcaatataccactgtttatgttggcaatcttgcaccagaggcaaggatcatatttttcttgaaggtggtggttgcccccaaaggtggaggttggaggtggctactggtggtgattggtgatagccggttggaggtggtggctgatgactgttggccaaaagtggtggttacttctgttgatctccatcaccatttccattctcttggtgctggaactattgaagacgttagggtgcaacgggacaaaggttttgggtttgtgagatacagtacccatgctgaagcagctctcgctatacagatgggtaatgctcgctttctatttggcaaacctatcaagtgttcatggggtagcaagcctactcctccaggaacagcctctactcctcttcctcctcctacttctgcgaatgtgtcgagcttttctcttggtggtcttgcagcgtatgaacggcaaatggctttgagtaaaatgggtggtgcacacgcccttatgcatcagcagggtcaacaacatgccctgaagcaggtagccatgggaatgggtgctcctggggcgggttatgatgcaagattccagaatgtggcgaccacccagcacctaatgtactatcagtaa 1233 0.0 MQPQRLRQHAMMQPSLYHHPALLTPPQIEPILSGNLPPGFDSSTCRSVYVGNIHPQVTEGLLQELFSTAGALEGCKLIRKEKSSYGFVDYFDRSSAAFAIVTLNGRNIFGQPIKVNWAYASSQREDTSGDILADHVLIEDAQGAINDLTGKWLGSRQIRCNWATKGANAGDEKQISDSKSVVDLTNGTSDESQEITNDDVPEKNPQYTTVYVGNLAPEARIIFFLKVVVAPKGGGWRWLLVVIGDSRLEVVADDCWPKVVVTSVDLHHHFHSLGAGTIEDVRVQRDKGFGFVRYSTHAEAALAIQMGNARFLFGKPIKCSWGSKPTPPGTASTPLPPPTSANVSSFSLGGLAAYERQMALSKMGGAHALMHQQGQQHALKQVAMGMGAPGAGYDARFQNVATTQHLMYYQ 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g03542 410 SUPERFAMILY RNA-binding domain, RBD 45 165 IPR035979 GO:0003676
Pste6g03542 410 Gene3D - 2 132 IPR012677 -
Pste6g03542 410 Coils Coil 408 410 - -
Pste6g03542 410 Gene3D - 185 328 IPR012677 -
Pste6g03542 410 SMART rrm1_1 209 320 IPR000504 GO:0003723
Pste6g03542 410 SMART rrm1_1 47 116 IPR000504 GO:0003723
Pste6g03542 410 SUPERFAMILY RNA-binding domain, RBD 261 330 IPR035979 GO:0003676
Pste6g03542 410 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 120 IPR000504 GO:0003723
Pste6g03542 410 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 114 IPR000504 GO:0003723
Pste6g03542 410 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 264 318 IPR000504 GO:0003723
Pste6g03542 410 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 324 IPR000504 GO:0003723
Pste6g03542 410 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 43 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g03542 Pste-Chr6 24450914 24457412 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g03542 47 215 Eukaryotic Initiation Factors Gene Family AT2G36660 25.532 2.02e-09 57.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g03542 6 24450914 24457412 Pste6g03542 6 24450914 24457412 ECH