Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g03540 atgtccacctcatcggagtattccagattttccggcaacccccccgccaagtctccgccggagaagttctccttctctcacacttgttctctgttgagccaatacatcaaggaaaagggcaccttccgagaccttaacctcggcatcacatgcactctccaaacaaacggttcccctgagacatcgtgtcactctgcagcaactaccatggatttgtttcccacatccatgacacagcggaaccctactgctatggatttcctctctccccaaaatgcttatcctcctcgccactcagaggttccacccatggttaaaccaagtgcatttaagtctatggaaaaggaccctaaagctgctcaattgacaatcttttatgctggacaagttattgtgtttgatgattttcctcgtgaaaaagtggaggagataatgtcattggccaacaaggggatatcccaaagccaaaactcctctgcatatgcccacgctcacgctcataaccagcaagggaatcatacttcctttgttcctcaaccgccatcaagatcaattgtttgtgatctgccaattgctaggaaagcttcccttcatcggttccttgaaaagagaaaagatagaattgcttccaaagctccataccaaacaaacaatcccaactctgcctctcataagacggctgaatccatgtcgtggcttggattaggagctcaacctacacaaatctga 729 0.0 MSTSSEYSRFSGNPPAKSPPEKFSFSHTCSLLSQYIKEKGTFRDLNLGITCTLQTNGSPETSCHSAATTMDLFPTSMTQRNPTAMDFLSPQNAYPPRHSEVPPMVKPSAFKSMEKDPKAAQLTIFYAGQVIVFDDFPREKVEEIMSLANKGISQSQNSSAYAHAHAHNQQGNHTSFVPQPPSRSIVCDLPIARKASLHRFLEKRKDRIASKAPYQTNNPNSASHKTAESMSWLGLGAQPTQI 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g03540 242 SMART tify_2 115 150 IPR010399 -
Pste6g03540 242 Pfam Jas motif 190 215 IPR018467 -
Pste6g03540 242 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 22 224 IPR040390 -
Pste6g03540 242 MobiDBLite consensus disorder prediction 158 179 - -
Pste6g03540 242 ProSiteProfiles Tify domain profile. 115 150 IPR010399 -
Pste6g03540 242 MobiDBLite consensus disorder prediction 211 242 - -
Pste6g03540 242 MobiDBLite consensus disorder prediction 208 242 - -
Pste6g03540 242 MobiDBLite consensus disorder prediction 1 23 - -
Pste6g03540 242 Pfam tify domain 117 149 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g03540 Pste-Chr6 24426314 24428545 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g03540 1 238 Tify Gene Family AT1G19180 40.613 1.47e-49 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Pste6g03540 tify 1.3e-17 No_clan