Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g03528 atgaaggctccatccaatggttacttgcctaattctggcgaagctggggaaaggaagacaatcaattcagagttatggcatgcttgtgctggacctttggtttctttgcctccagttggaagtcttgtggtttacttcccccaaggacacagtgagcaagttgcagcttccatgcaaaaggagactgacttcattcccagttaccctaaccttccttccaagttgatttgcatgcttcacaatgttgcgttacatgctgatcctgaaactgacgaggtctatgcacagatgacccttcaacctgtaaacaaatatgagaaagaagcaatactggcctcagatttgggtctcaaacaaagccgtcagcctactgagttcttttgcaaaactcttacagctagtgacacaagcactcatggtggattttctgtgcctcgtagagcagctgagaaaatattcccacctttggattattcaatgcaacctccagctcaggaacttgtagccaaggatttgcacgacaatacatgggcatttagacatatttatcggggacaaccaaagaggcatctattgaccactggatggagtgtatttgtcagcacaaaaaggctgtttgctggagattctgttttttttatcagagatgaaaaacagcatcttctgttaggtataaggcgtgctaacagacagcaaccagcactctcttcatcagtaatatccagtgacagcatgcacattggcattcttgctgctgcagctcatgctgctgcaaataacagcccgtttactatcttttacaacccaagggctagcccctctgaattcgttgttccactggccaagtataacaaagccatgtacactcaagtttctcttggaatgagatttagaatgatgtttgaaaccgaggagtctggagtacgtagatacacgggtacaatcactgggattagtgacttggatcctgctcgatggaaaaactcgcagtggcgcaatattcaggttggatgggatgaatcaactgctggtgagcgccccagtagagtttctatttgggaaattgaaccagttgtgactcctttctacatttgtccaccaccattttttaggcccaagttccccaggcaaccaggaatgccagacgatgaatcagatatggaaaatgctttcaagagagctatgccctggcttggagatgactttggcatgaaggatgcctcaagttcaatctttcctggttatagtttagtgcagtggatgaacatgcagcagaataatcagctatctgctgctcaatcggggtgtttcccatccatgcttccatctaattctcttcagggcaaccttagtactgatgacccttcaaagttattgaactttcaagctcctggcctctctaccccaagtcttcaattaagcaaacctaatttgtcaaaccaaatcaaccagttgcaacagtctccggtgtcatggcctctgcagcaacagctgcagcagcaacagttgcagcaacaacagctacagcaacaacaacagcagcagcagcagctacagcaacaacagcagcagcagctacagtcattgttgcaaataccaatgaatcagctccagcaacagaagcaacagcagcttcctgaaccacaaaacatgccaatgctgcagcaactgcctcagcagctaggacagcagcctcagaaacagcaacagtctaatcaacatgctactatcatgaataacggggtagttgcctctaaccagattacaaatcagtttgtccaacaaccaattgcatatggtcagcttcagcaacaacaattactctcaggaggtatccaaccccagcaaggtatccagtcagctagtaagaatacattcccattgacatccttaccacaagactcacaatttcagcaacagaatgaacagatagaccagcaagctagcctcttacagaggcagcagcaacaacagacacaattgcagcaatctccactgcagttgttgcaacaaaacctgccacagagatcaccacaaccaccacgagccactcaaatgttacagcaaaatccctcagagcaacaactccacctgcagttgctacagaaattgcagcagcagcagcagcagcaacaacttcattccacatctaccccacttctgcagtctcagcttctacaacaacaaaatactcaccaacaaaaccagcaactactgcagcctccaccatctatatctcaacctcagcctcagcctcagcctcaacaacttggcaataatgcattctcagcagagaagcttcccaacagcaacttctcttcatctcttatgcaatcacaacagctttcgatgaaccaacctcagaacacacagaaatcacttaccatcactagagctccctctacactaacagatggagacgccccatcatgctcaacttctccatctactaataactgtcacatatctcctccaaacctcctgaaaagaaatcagcaactaccagctacgttaggatcaggtttgatagttgagcccactagtaatctgatacaggagcttcacagtaagcctgacatgcagatcaagcacgagttgctcaatgtaaaaggacctgaccagctgaagtataaagggacaactacggatcagctggaagcttcttcttctggcacatcttactgtcttgatcctggtaatgtccagcagaacttaccactttccaacttctgcatggaaggggatgtccaatcacacccaagaaacagtttaccatttgaatctaatctggatggtctaactcctgatactatgcttctaagggggtatgactctcaaaaagatcttcaaaatttgttatctaactatggtggtgctccaagagacattgaaactgagctgtcaactgctgacatcagctcacagtcatttggactgccaaacatgcctttcaagcctggttgctcaagtgatgttggcatcaatgatactggggtcctgaataataataataatggcttgcgggctaaccaaactccacgaatgcgaacatatacaaaggtgcaaaagcgtggctctgttggaagatgtattgatgttacccgttacaagggatatgatgaacttcggcatgatttggctagaatgtttgggattgaagggcagctagaagatcctctaaggactgactggaaattagtatatgtggatcatgaaaatgacattcttcttgttggtgatgacccttgggatgaatttgtaatctgtgtccagagcataaagatattgtcatctgcagaagtgcagcaaatgagcttggatgtggatttaggtggtaatgtcccaatccccaaccaagcttgcagtgggacagacagtggcaatgcgtggaggggacaatacgaagataactcagctgcctcatttaataggtaa 3435 0.0 MKAPSNGYLPNSGEAGERKTINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKETDFIPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYEKEAILASDLGLKQSRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQELVAKDLHDNTWAFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVFFIRDEKQHLLLGIRRANRQQPALSSSVISSDSMHIGILAAAAHAAANNSPFTIFYNPRASPSEFVVPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYTGTITGISDLDPARWKNSQWRNIQVGWDESTAGERPSRVSIWEIEPVVTPFYICPPPFFRPKFPRQPGMPDDESDMENAFKRAMPWLGDDFGMKDASSSIFPGYSLVQWMNMQQNNQLSAAQSGCFPSMLPSNSLQGNLSTDDPSKLLNFQAPGLSTPSLQLSKPNLSNQINQLQQSPVSWPLQQQLQQQQLQQQQLQQQQQQQQQLQQQQQQQLQSLLQIPMNQLQQQKQQQLPEPQNMPMLQQLPQQLGQQPQKQQQSNQHATIMNNGVVASNQITNQFVQQPIAYGQLQQQQLLSGGIQPQQGIQSASKNTFPLTSLPQDSQFQQQNEQIDQQASLLQRQQQQQTQLQQSPLQLLQQNLPQRSPQPPRATQMLQQNPSEQQLHLQLLQKLQQQQQQQQLHSTSTPLLQSQLLQQQNTHQQNQQLLQPPPSISQPQPQPQPQQLGNNAFSAEKLPNSNFSSSLMQSQQLSMNQPQNTQKSLTITRAPSTLTDGDAPSCSTSPSTNNCHISPPNLLKRNQQLPATLGSGLIVEPTSNLIQELHSKPDMQIKHELLNVKGPDQLKYKGTTTDQLEASSSGTSYCLDPGNVQQNLPLSNFCMEGDVQSHPRNSLPFESNLDGLTPDTMLLRGYDSQKDLQNLLSNYGGAPRDIETELSTADISSQSFGLPNMPFKPGCSSDVGINDTGVLNNNNNGLRANQTPRMRTYTKVQKRGSVGRCIDVTRYKGYDELRHDLARMFGIEGQLEDPLRTDWKLVYVDHENDILLVGDDPWDEFVICVQSIKILSSAEVQQMSLDVDLGGNVPIPNQACSGTDSGNAWRGQYEDNSAASFNR 1144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g03528 1144 Coils Coil 494 528 - -
Pste6g03528 1144 FunFam Auxin response factor 1011 1105 - -
Pste6g03528 1144 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Pste6g03528 1144 SUPERFAMILY DNA-binding pseudobarrel domain 117 256 IPR015300 -
Pste6g03528 1144 Gene3D - 290 361 - -
Pste6g03528 1144 MobiDBLite consensus disorder prediction 673 694 - -
Pste6g03528 1144 MobiDBLite consensus disorder prediction 727 742 - -
Pste6g03528 1144 Coils Coil 637 657 - -
Pste6g03528 1144 MobiDBLite consensus disorder prediction 751 827 - -
Pste6g03528 1144 Pfam AUX/IAA family 1010 1102 IPR033389 -
Pste6g03528 1144 SMART B3_2 127 229 IPR003340 GO:0003677
Pste6g03528 1144 SUPERFAMILY CAD & PB1 domains 1029 1094 - -
Pste6g03528 1144 MobiDBLite consensus disorder prediction 624 651 - -
Pste6g03528 1144 Gene3D - 124 228 IPR015300 -
Pste6g03528 1144 FunFam Auxin response factor 125 229 - -
Pste6g03528 1144 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 581 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pste6g03528 1144 MobiDBLite consensus disorder prediction 727 827 - -
Pste6g03528 1144 FunFam Auxin response factor 290 362 - -
Pste6g03528 1144 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Pste6g03528 1144 ProSiteProfiles PB1 domain profile. 1016 1109 IPR000270 GO:0005515
Pste6g03528 1144 MobiDBLite consensus disorder prediction 1122 1144 - -
Pste6g03528 1144 Pfam Auxin response factor 253 335 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pste6g03528 1144 CDD B3_DNA 126 227 IPR003340 GO:0003677
Pste6g03528 1144 Gene3D - 1012 1105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g03528 Pste-Chr6 24210115 24222168 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g03528 1 488 B3 DNA Binding Superfamily AT1G19220 82.582 0.0 836
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pste6g03528 AUX_IAA 2.6e-08 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g03528 6 24210115 24222168 Pste6g03528 6 24210115 24222168 ECH
Pste6g03528 6 24210115 24222168 Pste2g01222 2 13436270 13444360 PCT