Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g03471 atgggattgtacgcggaagaggctgtctctggcttgacaatagggcaggccatctacgaggttgctctcatcattgcagttgtgagatgggtgctgtgtttggctttcagactgatgaatgacagcagcagaagaagagggtctgatgagacggcagcagcagagacatgttgtgagagcagggacaacgacattcttatggtgacaacgttcggagagattaaggagagggtgggagtgacggaggagacatgtgcggtgtgcttgagccagctgaaggtggaggacgaggttagggagctgatgaactgttaccatgtgttccacagagagtgcatagacagatggttggagcatcaacatgaacaccacaaccccacttgcccactttgcagggctcctttgctcacttcttcttctcaccaccataactctcctcctcctcaccctagttgggctgtcgagagacttctctatctctttggagatgatctcttacccatctgttag 510 0.0 MGLYAEEAVSGLTIGQAIYEVALIIAVVRWVLCLAFRLMNDSSRRRGSDETAAAETCCESRDNDILMVTTFGEIKERVGVTEETCAVCLSQLKVEDEVRELMNCYHVFHRECIDRWLEHQHEHHNPTCPLCRAPLLTSSSHHHNSPPPHPSWAVERLLYLFGDDLLPIC 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g03471 169 SUPERFAMILY RING/U-box 79 139 - -
Pste6g03471 169 Pfam Ring finger domain 84 132 IPR001841 -
Pste6g03471 169 PANTHER RING ZINC FINGER PROTEIN-RELATED 22 166 - -
Pste6g03471 169 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 146 IPR013083 -
Pste6g03471 169 ProSiteProfiles Zinc finger RING-type profile. 85 132 IPR001841 -
Pste6g03471 169 SMART ring_2 85 131 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g03471 Pste-Chr6 23420605 23421271 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g03471 1 165 C3H Transcription Factor Family AT5G20885 44.944 2.19e-38 127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g03471 6 23420605 23421271 Pste6g03471 6 23420605 23421271 ECH