Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g03463 atgtcagggtgggatgaaggagccgttttctacagcgaccaagcgcttgcaggtgacgacgccgccggcaaccgcggtgatcccggcaccgattcaaaccactcactcctccagaaattcaaggaattcatcaggaacttcgagaccaccaacaacgtcttcccttacagagagagtctcctccacaaccctaagttccttctcgtcgacatgggagatctcgacaccttcgattctgacctccccgctaaactccgctcttcccccgctgatgttttgcccttgtttgaaactgcagcggcgcaggttctcgtgagtttgaagaccaaggtggctggagataccggagttatggaggatccggcacccggtgatgtccagattttgctcacctccaaagaggatcccttgtcgataagatcccttggggctcaatacatatcaaagctagttaaaattgccggaattactattgctgcatcgaggactaaggcaaaggctacttatgttaccctggtctgtaagaattgtaagaagggaaagcaggtcccgtgccggcctgggcttgggggagcaattgttcctcgatcttgtgaccatatccctcagcctggagaagaaccttgcccaattgatccttggcttgtggttcctgacaaaagcaaatatgtagatcaacaaactttaaagctgcaagaaaatccagaggatgtcccaactggagagcttccaagaaacctgcttctctctgttgatcgtggtctggttcagacagtagtacctggctcaagattaacaatcatgggaatttatagtgtctaccaggcttctaactcttctacatcccacaaaggagcagttgccgtcagacagccttatattagggttgtagggatagaagaaacaaatgagaggtctcgaggtccagctgcatttacacaagatgagatcgaagaattcaaaaaatttgctactgcaccggatgcatataaaagtatctgctccaagattgccccatctatatttgggcatgatgatgttaaaaaggctgtagcttgtcttctgtttggaggatcaagaaagaatttgcccgacggagtcaggctaagaggtgacatcaatgtattgcttctgggggatccatctacagcaaagtcacagtttctgaagtttgttgaaaagactgctcctgttgctgtttatacttctggaaaaggctcatcggcagctggtcttactgcttctgtaatccaagatagcagcacacgtgagttttatctcgaaggaggagccatggtcttggctgatggaggtgttgtctgtattgatgagtttgataagatgaggccagaagatagagttgccattcatgaagccatggaacagcaaactatatccattgccaaggcaggaatcacaactgttcttaattcaagaacttcagttctagctgctgcaaaccctccatcaggacgttatgatgatcttaagactgcacaggataacattgacttgcaaacaacaattctttctcgttttgatttaattttcattgtgaaagatgtcagaatgtacagtcaagacaagataatagctaatcatatcataaaggtccatgcatcggctggtgcaacgatgggtgagagcaaaacttctaaagaagagaattggctgaagaggtatttacagtattgtcgatctgaatgccatcctcgtctatcagaatctgcaacaacattattgcagaatcattatgtgaaaatcagacaggatatgaggcaacaggcaaatgaaactggtgaagctgcagcaataccaattactgttaggcagctggaagctattgttaggttgagtgaagcacttgcaaagatgaaactatctcatcttgctaccgaggagcatgtgcaagaagcagtaaggcttttcaccgtgtccacaatggacgcagctaagtctggaataaaccaacaaataaatcttacgcctgatatggcaaatgagataaagcaagctgaaactcagataaagagaagaattgggatcggaaaccacatatcagaaagaaggctgattgatgacctcagcagaatggggatgaatgaatctattaaatttgctggtgtctttgtcatgagcacacacaaactgaaacaccaaaaatactaa 2169 0.0 MSGWDEGAVFYSDQALAGDDAAGNRGDPGTDSNHSLLQKFKEFIRNFETTNNVFPYRESLLHNPKFLLVDMGDLDTFDSDLPAKLRSSPADVLPLFETAAAQVLVSLKTKVAGDTGVMEDPAPGDVQILLTSKEDPLSIRSLGAQYISKLVKIAGITIAASRTKAKATYVTLVCKNCKKGKQVPCRPGLGGAIVPRSCDHIPQPGEEPCPIDPWLVVPDKSKYVDQQTLKLQENPEDVPTGELPRNLLLSVDRGLVQTVVPGSRLTIMGIYSVYQASNSSTSHKGAVAVRQPYIRVVGIEETNERSRGPAAFTQDEIEEFKKFATAPDAYKSICSKIAPSIFGHDDVKKAVACLLFGGSRKNLPDGVRLRGDINVLLLGDPSTAKSQFLKFVEKTAPVAVYTSGKGSSAAGLTASVIQDSSTREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKTAQDNIDLQTTILSRFDLIFIVKDVRMYSQDKIIANHIIKVHASAGATMGESKTSKEENWLKRYLQYCRSECHPRLSESATTLLQNHYVKIRQDMRQQANETGEAAAIPITVRQLEAIVRLSEALAKMKLSHLATEEHVQEAVRLFTVSTMDAAKSGINQQINLTPDMANEIKQAETQIKRRIGIGNHISERRLIDDLSRMGMNESIKFAGVFVMSTHKLKHQKY 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g03463 722 SUPERFAMILY Nucleic acid-binding proteins 39 296 IPR012340 -
Pste6g03463 722 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 339 647 IPR027417 -
Pste6g03463 722 CDD MCM5 333 646 - -
Pste6g03463 722 Gene3D - 310 665 IPR027417 -
Pste6g03463 722 PRINTS Mini-chromosome maintenance (MCM) protein family signature 458 471 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pste6g03463 722 PRINTS Mini-chromosome maintenance (MCM) protein family signature 509 517 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pste6g03463 722 PRINTS Mini-chromosome maintenance (MCM) protein family signature 430 444 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pste6g03463 722 PRINTS Mini-chromosome maintenance (MCM) protein family signature 482 494 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pste6g03463 722 PRINTS Mini-chromosome maintenance (MCM) protein family signature 370 385 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pste6g03463 722 ProSiteProfiles MCM family domain profile. 329 535 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pste6g03463 722 Pfam MCM AAA-lid domain 557 646 IPR041562 -
Pste6g03463 722 Gene3D - 32 115 - -
Pste6g03463 722 ProSitePatterns MCM family signature. 438 446 IPR018525 GO:0003677|GO:0005524|GO:0006260
Pste6g03463 722 FunFam DNA helicase 166 224 - -
Pste6g03463 722 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 290 302 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Pste6g03463 722 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 166 178 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Pste6g03463 722 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 641 658 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Pste6g03463 722 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 565 580 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Pste6g03463 722 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 140 155 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Pste6g03463 722 FunFam DNA helicase 310 661 - -
Pste6g03463 722 SMART mcm 135 648 IPR031327 GO:0003677|GO:0005524|GO:0032508
Pste6g03463 722 Gene3D - 139 274 IPR012340 -
Pste6g03463 722 Pfam MCM P-loop domain 317 539 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pste6g03463 722 FunFam DNA helicase 31 119 - -
Pste6g03463 722 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 34 682 IPR031327 GO:0003677|GO:0005524|GO:0032508
Pste6g03463 722 Gene3D - 166 224 - -
Pste6g03463 722 Pfam MCM N-terminal domain 38 109 IPR027925 -
Pste6g03463 722 Pfam MCM OB domain 138 274 IPR033762 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g03463 Pste-Chr6 23359570 23364580 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g03463 1 712 Core DNA Replication Machinery Family AT2G07690 77.139 0.0 1138