Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g03460 atggcctccgacatatcgtttgaagacctcaaaaacgagaatgtggatcttgaacacattcccgttgaggaagttttcaagcaattaaaatgtactagagagggtctcacatccgctgaagggcagaagaggctccaaatttttggtcccaataagctagaggaaaaaaaagatagcaagttacttaagttcttgggttttatgtggaatccactatcatgggtcatggaggctgctgctatcatggccatcgcattggccaatggagggggcaagccaccggattggcaagatttcgttggtattcttgtgttgctgataatcaattcaaccattagttttattgaggagaacaatgccggcaatgccgcagcagctttgatggctggtcttgcacccaaaaccaaggtgttgagggatggaaaatggagtgaggaggaggcttcacttttggtgccaggagatttgatcagcatcaagttgggagatattgtccccgctgatgctcgtctcttggagggagatcccctcaagattgatcagtctgccctcactggtgagtccttgccagtcaccaagaaccctggcagtgaggtcttctctggctccacctgcaagcaaggtgagattgaagctgttgtcattgccactggtgttcacaccttctttggcaaggctgcacatcttgtagacagcaccaacaatgttggtcacttccagaaggtgttgacttccattggaaacttctgtatctgctcaattgctgtgggcatgttgattgagattattgtgatgtaccccatccagcaaagggcatacagagatggtattgacaatttgttggttctcctcatcggaggtatcccaattgccatgccaacagtcttgtctgtcaccatggctattggatctcaccgtttgtctgagcaaggagccatcaccaagaggatgacagccattgaagaaatggctggcatggatgtgctttgcagtgacaagaccggaactctcacacttaacaagctcactgtggacaagagcttaattgaggtgttccccactggcatggacacggatacccttatcttgtatgctgccagggcttccaggactgaaaatcaggatgccattgatgcttcaattgttggagtgttgggtgaccccaaggaggcaagagcaggaatcactgaggtgcatttcttgcccttcaatcctgtggacaaacgcacagctattacctacattgatggtcaaggcaattggcacagaagcagcaagggtgcccctgagcaaattattgagctctgtgagctcaagggggaggttttgaaaaaggcccataaagtcattgatgagtatgctaatcgtggcctgcgtgcattgggtgtttcacgccagactgtttcagcaaagagcaaggagagtgaaggagacgcatgggagttcttgggtctcttgcccctctttgaccctccaaggcacgacagtgcagagactattcgacgtgctcttgaccttggtgtaaacgttaagatgatcactggtgaccaacttgccattggaaaagaaaccggtcgcagacttggaatgggcaccaacatgtacccttcatcctctcttcttggcgctagcaaggaccctaccatttcatctatcccagttgatgaactcatcgagaaggctgacggatttgccggagtcttccccgagcacaagtatgagatcgtgaagaggttgcaggagatgaagcatatatgtggaatgactggagatggtgtgaatgatgccccagcactgaagaaggcagacattggtattgccgtggccgatgcaacagacgcagccagaagtgcctcagacattgttctgacagagcccggactgagtgtgatcgtgagtgctgtgttgaccagcagagccatcttccagaggatgaagaactacacaatttatgccgtttccatcaccatccgtattgtgtttggattcatgctcgttgcacttatctggaagtttgacttcgcccccttcatggtcctcatcatcgccatcttgaacgatggaaccatcatgaccatctccaaggacagggtgaagccttctcctctacctgactcatggaagctcaaagaaatcttcgccaccggaattgttcttggagcttacatggccatcatcactgttctcttcttctatttggttcatgacaccgatttcttctccagagttttccatgtgatgccaattgcagacagtgaggagcagcttaactcagctctctaccttcaagtgagtattatcagtcaagcactcatcttcgtgacaaggtcaaggagctggtcttatgttgaacgccccggcattttgcttatcacagccttctttgctgcacaattggtggccaccgtgattgctgtgtatgcacactgggactttgccaggatcaatggagttggttggggatgggcaggagtaatctggatcttcagcattattacctacattcctcttgacatcctcaagttcctcatcaggctgggattatcaggaagggcatgggacaacatgcttgagaacaagactgctttcacaacaaagaaggactatggaaagggagaaagggaagctcaatgggcggtggctcagcgcacactgcatggtctccaagtaggagaatccaacaaggccaaccaacatgagcagtctgaaattgccgaacaagcaaagagacgtgctgaggctgccaggttgagggagctccacacactcaagggacatgttgagtctgtggtcaagttgaagggtattgacattgataccatccaacaacattacacgctctaa 2844 0.0 MASDISFEDLKNENVDLEHIPVEEVFKQLKCTREGLTSAEGQKRLQIFGPNKLEEKKDSKLLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGILVLLIINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWSEEEASLLVPGDLISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTKNPGSEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNNVGHFQKVLTSIGNFCICSIAVGMLIEIIVMYPIQQRAYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSEQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKSLIEVFPTGMDTDTLILYAARASRTENQDAIDASIVGVLGDPKEARAGITEVHFLPFNPVDKRTAITYIDGQGNWHRSSKGAPEQIIELCELKGEVLKKAHKVIDEYANRGLRALGVSRQTVSAKSKESEGDAWEFLGLLPLFDPPRHDSAETIRRALDLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGASKDPTISSIPVDELIEKADGFAGVFPEHKYEIVKRLQEMKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMLVALIWKFDFAPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLKEIFATGIVLGAYMAIITVLFFYLVHDTDFFSRVFHVMPIADSEEQLNSALYLQVSIISQALIFVTRSRSWSYVERPGILLITAFFAAQLVATVIAVYAHWDFARINGVGWGWAGVIWIFSIITYIPLDILKFLIRLGLSGRAWDNMLENKTAFTTKKDYGKGEREAQWAVAQRTLHGLQVGESNKANQHEQSEIAEQAKRRAEAARLRELHTLKGHVESVVKLKGIDIDTIQQHYTL 947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g03460 947 FunFam Plasma membrane ATPase 482 637 - -
Pste6g03460 947 SMART Cation_ATPase_N_a_2 16 88 IPR004014 -
Pste6g03460 947 Pfam haloacid dehalogenase-like hydrolase 326 603 - -
Pste6g03460 947 Gene3D - 95 816 - -
Pste6g03460 947 CDD P-type_ATPase_H 35 842 IPR006534 GO:0008553|GO:0016020|GO:0120029
Pste6g03460 947 NCBIfam HAD-IC family P-type ATPase 564 679 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pste6g03460 947 NCBIfam HAD-IC family P-type ATPase 102 349 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pste6g03460 947 SUPERFAMILY Calcium ATPase, transduction domain A 133 230 IPR008250 -
Pste6g03460 947 SUPERFAMILY Calcium ATPase, transmembrane domain M 15 846 IPR023298 -
Pste6g03460 947 NCBIfam plasma-membrane proton-efflux P-type ATPase 35 807 IPR006534 GO:0008553|GO:0016020|GO:0120029
Pste6g03460 947 FunFam Plasma membrane ATPase 133 217 - -
Pste6g03460 947 Gene3D - 327 626 IPR023214 -
Pste6g03460 947 PRINTS H+-transporting ATPase (proton pump) signature 620 645 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pste6g03460 947 PRINTS H+-transporting ATPase (proton pump) signature 561 577 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pste6g03460 947 PRINTS H+-transporting ATPase (proton pump) signature 589 605 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pste6g03460 947 PRINTS H+-transporting ATPase (proton pump) signature 446 464 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pste6g03460 947 PRINTS H+-transporting ATPase (proton pump) signature 761 782 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pste6g03460 947 SFLD p-type atpase 312 641 IPR044492 -
Pste6g03460 947 Pfam E1-E2 ATPase 132 309 - -
Pste6g03460 947 Gene3D - 342 489 IPR023299 GO:0000166
Pste6g03460 947 ProSitePatterns E1-E2 ATPases phosphorylation site. 332 338 IPR018303 -
Pste6g03460 947 Gene3D - 133 217 - -
Pste6g03460 947 FunFam Plasma membrane ATPase 342 489 - -
Pste6g03460 947 PANTHER CALCIUM-TRANSPORTING ATPASE 19 884 - -
Pste6g03460 947 SUPERFAMILY HAD-like 326 636 IPR036412 -
Pste6g03460 947 PRINTS P-type cation-transporting ATPase superfamily signature 180 194 - -
Pste6g03460 947 PRINTS P-type cation-transporting ATPase superfamily signature 330 344 - -
Pste6g03460 947 PRINTS P-type cation-transporting ATPase superfamily signature 484 495 - -
Pste6g03460 947 PRINTS P-type cation-transporting ATPase superfamily signature 589 608 - -
Pste6g03460 947 PRINTS P-type cation-transporting ATPase superfamily signature 506 516 - -
Pste6g03460 947 PRINTS P-type cation-transporting ATPase superfamily signature 612 624 - -
Pste6g03460 947 Gene3D - 897 947 - -
Pste6g03460 947 FunFam ATPase 4 plasma membrane-type 584 816 - -
Pste6g03460 947 Pfam Cation transporter/ATPase, N-terminus 19 82 IPR004014 -
Pste6g03460 947 SFLD C1.7: P-type atpase like 312 641 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g03460 Pste-Chr6 23335615 23340246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g03460 1 947 Primary Pumps ATPases AT3G42640 84.916 0.0 1638
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g03460 6 23335615 23340246 Pste6g03460 6 23335615 23340246 ECH