Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g03418 atggggttgggagtgtttggttctgttctggtgttggcactcttgttcaaacatttggcatctcagcaacctaataccgatgacttcttcgtgtctgagttcttgaataagatgggtttaacatcctcccaagcctacaatttctctgcttctgtctgttcatggcaaggggtttcttgtgatgacaatagagaacatgttgtggagttagtcttttctggtatggaactctctggaactatacctgacaacaccataggcaagctaggcaggcttcaatctttggatcttagccgcaacaaaatcaccggcttgccttctgatttctggagtttgaactctctcaagggccttaacctatcctccaatcaaatttctggttcattgactaacaacattgacaactttggtttgctagaaatgtttgacttgtcaagaaacaacttctctgaggaaattcctgaagctgttggctcgctgcagagtctgagggttctcaaacttgaccacaacaagtttgcacacaacatacctacagggattctcaagtgccagtctctagtttcaattgatctttcatcaaatcagctcaatggaacacttccagaaggttttggtgctgcttttcctaagcttacggtcttgaacctttcagggaataatatgtatggtcgtatttcagatatttctggactaaagtccattgtgaatctcaacatatcagggaattcgtttcagggttctattatggatgtatttcagggaagcttggaagttctggaccttagcagaaaccaatttcaaggtatcattccacaggtactatacaaattcagtagttacaattggtctcgtttagtttatctggatttgtcagagaataagcttagtggggatttttttcaaaatttaagtgagtctttgagtataaagcacgttaatcttgcacacaaccgatttaccagacagaactttccacaaattgaaatgcttctgagattggaatatctgaacttgtccaaaactagccttgttggagaaattcctgatgaaatctcacaattaagcaatttgagagcacttgatctttctatgaatcatcttagtgggaaaattccgttaatgaggaatgaacatcttcacgtccttgatctttcaaacaacaatttgactggagcagtccctccatctgtcttggagaaactcccatggatggagaaatacaacttctcttacaacaacctaaccctttgtgcttctgaaatcaaacctgaggtcctgcaaacagcattctttggatcgttgaacagttgtccaattgctgcaaacccgcgacttttcaagcaaagagacactggacagaagggaatgaagctagccttggcattgaccttctcaatgatatttgtgcttactgggcttttgtttctagcagttggttgcagaaggaaaacaaaaatgtgggaattcaagcaagcttcatacaaagaagaacaaaatatttcaggccccttttctttccagactgattcaacaacttgggtggctgatgttaagcaagcaacagcagtcccagtagtaatctttgagaagccattattgaatatcacatttgcagacctgttggctgcaacttctaattttgataggggcacccttttggctgaaggaaaatttggcccagtctatagaggctttctgcctggtggcattcatgtggcagttaaagttttggttgttggctctacactgacagatgaaaaggctgcaagagagctagagtttcttggtagaatcaagcacccaaatcttgtgcctttaactgggtattgtgtagctggggatcagagaattgccatatatgattacatggagaatggtaacttacaaaacctgctttatgacttgccacttggggtacaaagcacagatgattggagtacggacacatgggaagaagctgacaacaacggcattcaaaatgcaggctctgaaggtttactcacatcttggagattccgccacaaaatcgcccttggcactgctcgagcattggcctttttgcatcatggttgctcgcctccaataattcacagagctgttaaggctagcagtgtgtatttggactatgatttggagccaagattgtctgattttgggttggcaaagatttttggaagtggcttggatgatgaaattgcacgtggttcacctggctatgttccaccagagtttactcaaccagaatttgacaccccaacaccaaaatctgatgtttactgttttggggtggtgctctttgagctagtaactggaaagaagccagttggagatgattaccctgatgataaagaagcaactttggtaagttgggtgagaggacttgtaagaaagagccaagcttcaagagctattgatccaaaaattcgtgacacaggacctgatgaacaaatggaggaggctcttaagattggttatctttgcactgctgatcttcccttcaaacgaccaagcatgcaacagatagttggacttctaaaggatattgaacctactgctagttag 2565 0.0 MGLGVFGSVLVLALLFKHLASQQPNTDDFFVSEFLNKMGLTSSQAYNFSASVCSWQGVSCDDNREHVVELVFSGMELSGTIPDNTIGKLGRLQSLDLSRNKITGLPSDFWSLNSLKGLNLSSNQISGSLTNNIDNFGLLEMFDLSRNNFSEEIPEAVGSLQSLRVLKLDHNKFAHNIPTGILKCQSLVSIDLSSNQLNGTLPEGFGAAFPKLTVLNLSGNNMYGRISDISGLKSIVNLNISGNSFQGSIMDVFQGSLEVLDLSRNQFQGIIPQVLYKFSSYNWSRLVYLDLSENKLSGDFFQNLSESLSIKHVNLAHNRFTRQNFPQIEMLLRLEYLNLSKTSLVGEIPDEISQLSNLRALDLSMNHLSGKIPLMRNEHLHVLDLSNNNLTGAVPPSVLEKLPWMEKYNFSYNNLTLCASEIKPEVLQTAFFGSLNSCPIAANPRLFKQRDTGQKGMKLALALTFSMIFVLTGLLFLAVGCRRKTKMWEFKQASYKEEQNISGPFSFQTDSTTWVADVKQATAVPVVIFEKPLLNITFADLLAATSNFDRGTLLAEGKFGPVYRGFLPGGIHVAVKVLVVGSTLTDEKAARELEFLGRIKHPNLVPLTGYCVAGDQRIAIYDYMENGNLQNLLYDLPLGVQSTDDWSTDTWEEADNNGIQNAGSEGLLTSWRFRHKIALGTARALAFLHHGCSPPIIHRAVKASSVYLDYDLEPRLSDFGLAKIFGSGLDDEIARGSPGYVPPEFTQPEFDTPTPKSDVYCFGVVLFELVTGKKPVGDDYPDDKEATLVSWVRGLVRKSQASRAIDPKIRDTGPDEQMEEALKIGYLCTADLPFKRPSMQQIVGLLKDIEPTAS 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g03418 854 FunFam Nuclear pore complex protein NUP107 29 179 - -
Pste6g03418 854 ProSiteProfiles Protein kinase domain profile. 548 853 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste6g03418 854 SUPERFAMILY L domain-like 45 420 - -
Pste6g03418 854 Gene3D Ribonuclease Inhibitor 377 426 IPR032675 -
Pste6g03418 854 PRINTS Leucine-rich repeat signature 355 368 - -
Pste6g03418 854 PRINTS Leucine-rich repeat signature 92 105 - -
Pste6g03418 854 Pfam Protein tyrosine and serine/threonine kinase 552 844 IPR001245 GO:0004672|GO:0006468
Pste6g03418 854 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 277 849 - -
Pste6g03418 854 Gene3D Ribonuclease Inhibitor 280 376 IPR032675 -
Pste6g03418 854 SMART LRR_typ_2 255 277 IPR003591 -
Pste6g03418 854 SMART LRR_typ_2 331 355 IPR003591 -
Pste6g03418 854 SMART LRR_typ_2 160 184 IPR003591 -
Pste6g03418 854 SMART LRR_typ_2 378 401 IPR003591 -
Pste6g03418 854 SMART LRR_typ_2 89 111 IPR003591 -
Pste6g03418 854 SMART LRR_typ_2 112 136 IPR003591 -
Pste6g03418 854 SUPERFAMILY Protein kinase-like (PK-like) 527 846 IPR011009 -
Pste6g03418 854 FunFam Putative LRR receptor-like serine/threonine-protein kinase 509 623 - -
Pste6g03418 854 Gene3D Phosphorylase Kinase; domain 1 508 623 - -
Pste6g03418 854 FunFam Calmodulin-binding receptor kinase CaMRLK 255 375 - -
Pste6g03418 854 Pfam Leucine Rich repeat 377 392 IPR001611 GO:0005515
Pste6g03418 854 Gene3D Ribonuclease Inhibitor 30 279 IPR032675 -
Pste6g03418 854 Gene3D Transferase(Phosphotransferase) domain 1 624 853 - -
Pste6g03418 854 Pfam Leucine rich repeat 162 221 IPR001611 GO:0005515
Pste6g03418 854 Pfam Leucine rich repeat 80 125 IPR001611 GO:0005515
Pste6g03418 854 ProSiteProfiles Leucine-rich repeat profile. 91 112 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g03418 Pste-Chr6 22836056 22844040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g03418 39 849 Receptor kinase-like Gene Family AT5G07280 31.981 6.92e-110 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Pste6g03418 PK_Tyr_Ser-Thr 2e-30 CL0016