LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste6g03415	atggctagtgtatgtggggtacctggggtgtttgtaaccattcttcagcttcattgcttcccaccccaattcagcctaggagcactaatgcttagtttagagttgtattttggtggaaattcaaggtacatgaacaaacaggagacagttggacctcctgaaaaggaaattattgaaagaggagcagctcaaccaatccaagctcaagctcagacagaaaatcggcttcaagtgtctgcatgttcaactccattgtatgaactgtcaccaacttctgttgcacaatgtttatcatctgtttctagtccaactgtaccaaaacagaaaatatctattccaaaggtcaataatgctcatgtgccagaaatagataagaaaaacccttctggtggaaaaaccttagctgctgtttctgttgcaagggcgtcttcatctgacggatacaactggcggaagtatggtcagaagcaagtgaagagtcctacaggttctcgaagctattacaggtgtactcattctgactgttgtgcgaagaagattgaatgctgtaatcatttaggtcatgtgatagagattgtttataagagtgagcacagtcatgatcccccactcaagacgaattccataagggaaagtaagtttctgtcttccagtgaacctattgtagaaaacagtgttccagtgcagcctgtcagagttctgaaggattctgatccatccatttcttcaaaagaatctctgcaagaagtgccctgcagcactgataagaaacgacaaaactcatctaatatcagtggtaatggtaaagttatgttaaaagaggaacatgtaaatgaaatgaagaaaggtgacttaacagacatggattctcctgtaaaacctggaaagaagcccaagtttgttgtacatgcagcaggggatgtggggatatctggtgatggttaccgatggcgcaagtatgggcagaaaatggtgaagggaaatccacatcccagcactgtgatgctaagcaccggaagtgagataatgatggtggtgtatatgaaatggaagccaagagtaatgtggacagctgagtcagcattgatatggagagagaaatctctgccattgagagctgcacaccttactccatgggaagaaaagcaggtcagcaggcatacttgtgtttatgaagaagagaaatgcacttgggaggaagagaatatgaggatattttttatattccgcaagaactattacagatgcacttctgctggatgtcctgtcagaaagcacattgagattgctgtagataattcagatgctgtcatcataacatacaaaggtgtacatgatcatgacatgcctgtgcccaagaaacgacacgggccaccaagtgctcctcttgtggctgccgcagcacctgcctccatgaacagtttgcaggtgaagaaacccgattccccacaaaacaagaaagtttctactcaatggtcagtggatacagaaggagaactaactggggaagccctggagcttgggggtgagaaagcaatggaatcagctcgaacacttctgagcataggttttgaaattaaaccctgttga	1590	0.0	MASVCGVPGVFVTILQLHCFPPQFSLGALMLSLELYFGGNSRYMNKQETVGPPEKEIIERGAAQPIQAQAQTENRLQVSACSTPLYELSPTSVAQCLSSVSSPTVPKQKISIPKVNNAHVPEIDKKNPSGGKTLAAVSVARASSSDGYNWRKYGQKQVKSPTGSRSYYRCTHSDCCAKKIECCNHLGHVIEIVYKSEHSHDPPLKTNSIRESKFLSSSEPIVENSVPVQPVRVLKDSDPSISSKESLQEVPCSTDKKRQNSSNISGNGKVMLKEEHVNEMKKGDLTDMDSPVKPGKKPKFVVHAAGDVGISGDGYRWRKYGQKMVKGNPHPSTVMLSTGSEIMMVVYMKWKPRVMWTAESALIWREKSLPLRAAHLTPWEEKQVSRHTCVYEEEKCTWEEENMRIFFIFRKNYYRCTSAGCPVRKHIEIAVDNSDAVIITYKGVHDHDMPVPKKRHGPPSAPLVAAAAPASMNSLQVKKPDSPQNKKVSTQWSVDTEGELTGEALELGGEKAMESARTLLSIGFEIKPC	529

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste6g03415	529	SUPERFAMILY	WRKY DNA-binding domain	307	332	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Pste6g03415	529	SUPERFAMILY	WRKY DNA-binding domain	142	203	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Pste6g03415	529	Gene3D	WRKY domain	131	204	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Pste6g03415	529	Gene3D	WRKY domain	296	451	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Pste6g03415	529	ProSiteProfiles	WRKY domain profile.	139	203	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pste6g03415	529	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	95	478	IPR044810	GO:0003700
	Pste6g03415	529	SMART	WRKY_cls	144	202	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pste6g03415	529	SMART	WRKY_cls	311	449	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pste6g03415	529	Pfam	WRKY DNA -binding domain	409	447	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pste6g03415	529	Pfam	WRKY DNA -binding domain	313	332	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pste6g03415	529	Pfam	WRKY DNA -binding domain	146	200	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pste6g03415	529	SUPERFAMILY	WRKY DNA-binding domain	409	450	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Pste6g03415	529	ProSiteProfiles	WRKY domain profile.	306	450	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pste6g03415	529	MobiDBLite	consensus disorder prediction	240	267	-	-
	Pste6g03415	529	MobiDBLite	consensus disorder prediction	234	267	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste6g03415	Pste-Chr6	22800922	22806570	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste6g03415	411	529	WRKY Transcription Factor Family	AT4G30935	70.000	5.83e-46	166

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Pste6g03415		WRKY	5e-17	CL0274