Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g03404 atgtttgactgtggtcacaagtcagattacatgggtggccagcgggaaaattttttgaggttggaagccttggattctacactatcttcatcttctgatgctggagttataaaatctggatttagtattgataaattaagccatggtggtcatggaagcagcgcaacttctaggtcttttaagaggggtatgagaaggggatctgaaggattgaaatcaattgggcgatcgcttgggttgggagtatctagggcagtgtttccagaagatcttaaagtgtcagaaaagaagatatttgatcctcaagacaaatttctcctcttatggaataaactttttgttatctcatgcattgttgctgtgtctatagatccactgtttttttatctcccagttgttaatgataaatttcactgtcttggcatagaccgaaagttggcaacaatagttacaaccttaaggacagtgattgatgctttctatctaatacacatggctctccaatttcgtactgcttatatcgctccatcttctcgtgtctttggacgaggtgagcttgtgatagattcgacacagatagccaaacgatacttgcggcggtatttcatcgttgatttcctatctgtgttgccaatacctcagattgtggtttggagatttcttcagagatcaaaaggttcagatgtactagcaacaaagcaggccttgttgttcattatcttgcttcagtatattcctagatttctccgaatggtaccgttgacttcagagcttaagagaacagccggtgtctttgctgaaactgcatgggcaggtgctgcatattatttgctgctatacatgcttgccagccatatagttggtgctttttggtacttgttagctattgaacgcaatgactcatgctggcagaaggcttgcagtgacaatgatgtgtgcaataaaaatttcttatactgtgggaatcatcacatggaaggtagtgattggaataagacaagtgaatctattctcaagtcaaagtgctctacagatggtgatcctcccccttttgattatggaatttttgagctagtcttgtcttctggcatcatttcatctaagaagctagcatccattagaaagactgaaacaaatgtattctgtgtgaagtctgacctgaatactgatataccaaccatttctgcagaagcattagccaccctcctattacaaatgtgtaaaatagaaaaagctggaatggtaccatgggaattgtactggctgctgagttggaagagtgagagaagagcagaggtttataccaatctgcactcatggcaagggatttgtacacttggccaggggcttcaaactagcacctacccgggggaggttatattctcaatagcactagctataagtggcctcatcctttttgcgcttctgattggcaacatgcagacatatcttcagtcgctcaccattagacttgaggaaatgagagtcaaaaggcgtgattcagagcagtggatgcaccatcgtttactcccacaagagctcagagaacgagtgagacggtatgaccaatataagtggctggcaacgcgtggtgtagatgaagaaaatttagttcagagtctaccaaaggatctccggagagatattaagcgtcatctttgtttggccttagtgaggagggttccactatttgagagtatggacgagagattgcttgatgccatatgtgagagactgaaaccatgtttatttacagagaatacttacattgttcgagaaggagatccagttgatgagatgctgttcatcatacgtggtcgccttgagagtgttaccacagatggtgggaggagtggatttttcaaccgcagttttctgaaagaggcagacttctgtggggaggagcttttaacctgggccctggatcccaaatctggttctaatctcccatcttctactaggactgttaaggcattaatggaggttgaagcttttgccttaactgctgacgagttaaaatttgttgccagtcagtttaggcgccttcacagtagacaggttcaacacactttccgattttattcccaacaatggaggacctgggctgcatgctttattcaagcagcatggcgtcggtattctaaaaagaaaattatgaaacttcgtcaaaaggaagaagatgctgatgagtcagaaggaacacatgaaaatgttggtggcagttcctacagctttggtgctgccctgttagcctcaaagtttgctgcacacactcttcgtggcgtacatcgcaatcgacttgctaagactgccagggagttggtgaaactacagaaaccccctgagcctgacttctctgcagatgatgctgactaa 2376 0.0 MFDCGHKSDYMGGQRENFLRLEALDSTLSSSSDAGVIKSGFSIDKLSHGGHGSSATSRSFKRGMRRGSEGLKSIGRSLGLGVSRAVFPEDLKVSEKKIFDPQDKFLLLWNKLFVISCIVAVSIDPLFFYLPVVNDKFHCLGIDRKLATIVTTLRTVIDAFYLIHMALQFRTAYIAPSSRVFGRGELVIDSTQIAKRYLRRYFIVDFLSVLPIPQIVVWRFLQRSKGSDVLATKQALLFIILLQYIPRFLRMVPLTSELKRTAGVFAETAWAGAAYYLLLYMLASHIVGAFWYLLAIERNDSCWQKACSDNDVCNKNFLYCGNHHMEGSDWNKTSESILKSKCSTDGDPPPFDYGIFELVLSSGIISSKKLASIRKTETNVFCVKSDLNTDIPTISAEALATLLLQMCKIEKAGMVPWELYWLLSWKSERRAEVYTNLHSWQGICTLGQGLQTSTYPGEVIFSIALAISGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRLLPQELRERVRRYDQYKWLATRGVDEENLVQSLPKDLRRDIKRHLCLALVRRVPLFESMDERLLDAICERLKPCLFTENTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRSFLKEADFCGEELLTWALDPKSGSNLPSSTRTVKALMEVEAFALTADELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKKKIMKLRQKEEDADESEGTHENVGGSSYSFGAALLASKFAAHTLRGVHRNRLAKTARELVKLQKPPEPDFSADDAD 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g03404 791 ProSiteProfiles cAMP/cGMP binding motif profile. 563 647 IPR000595 -
Pste6g03404 791 FunFam Cyclic nucleotide-gated ion channel 1 561 679 - -
Pste6g03404 791 SUPERFAMILY cAMP-binding domain-like 492 683 IPR018490 -
Pste6g03404 791 FunFam Cyclic nucleotide-gated ion channel 1 490 554 - -
Pste6g03404 791 SUPERFAMILY Voltage-gated potassium channels 100 485 - -
Pste6g03404 791 Gene3D Jelly Rolls 561 681 IPR014710 -
Pste6g03404 791 Gene3D Helix hairpin bin 491 554 - -
Pste6g03404 791 Gene3D - 111 338 - -
Pste6g03404 791 SMART cnmp_10 563 694 IPR000595 -
Pste6g03404 791 Pfam Ion transport protein 108 489 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Pste6g03404 791 Pfam Cyclic nucleotide-binding domain 584 674 IPR000595 -
Pste6g03404 791 CDD CAP_ED 563 694 IPR000595 -
Pste6g03404 791 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 90 785 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g03404 Pste-Chr6 22714388 22721999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g03404 1 789 Ion Channels AT2G23980 69.183 0.0 1098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g03404 6 22714388 22721999 Pste6g03404 6 22714388 22721999 ECH