LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste6g03387	atgcagcagagtgatcaaacggtgttgagcttgaggcccggtggtggaagaggcagcaggctcgtcgctcctcgattcgactcctcttcatccacgtcttctgcttcccctgcttttggctccttttccgctgatcttcctctcctgcgtccccatgctggagctccctctcccttctctatcaaggctggagattcacggtttgagggtcgtgagcgagtgcgatataccagggagcagcttttacagcttagagagggtgttgagatccttgatgatgttttaaagatcaaacaagatgttgaagctgaattttttggcgaagatcaaagctgggcccgctcagaaaacaatccctcaaatcaatttcaaaatagatattctgagccagatactcgtgactggcgtggacgatctggccaactttcgggtaatgcagatgagaggtcttgggataatctcaaggagaatagggattttggcaatactagtcagaatcgtcaagaccaattgaactctcagtttgcaagggcacacatctcttccaaccaagcgggaggacctaccccgacactagtcaaggctgaggtgccatggtcagctaaaagaggaactctctctgaaaaggatcgtgtcttaaagacagttaaaggatttctggatggtcatgcattcctaggtctcaacatttggtcctgtacctttgattgaatactaaataagttgactccagagaaatttgatctcctgaagggtcagttgatcgattctggcattacttcagctgacatattgaagggagttatttcactgatatttgataaggcagtgctagaaccaacgttttgccccatgtatgctcagctgtgttctgatcttaatgaaaagctgcctccattcccatctgatgagcctggtgggaaagaaatcacttttaagcgagtactcctgaataactgccaggaggcttttgaaggtgcaggtaaactgagggaagaagtgagacagatgactgcccctgaccaggagatggagcgacgggacaaggaaagacttgtcaagattcgaactcttggaaatatccgtttaattggtgagctgttgaagcaaaaaatggttcctgaaaagattgttcatcacattgttcaggagcttttaggaccacctgacagcaaggtctgtccagctgaggaaaatgttgaagccatatgtcaatttttcaacactattggtaagcagcttgatgagagcccaaaatcacggcgcataaatgatatgtactttatccggttgaaagaattgagcaccaacccccaacttgcaccaaggctgcgttttatggtccgtgatgttctagatttgcgttctaataactggattccaagacgtgaagaggtgaaggcaaaaaccatcactgaaattcattcagaggcagaaaaaaatcttggattgcgtccaggtgctactgcaagtggtttgatgcctgggatgccggggaacagaaggatgccgggaattgataatgacaactgggagatgcctaggacaagatcaatgccgagaggagacatgtcaggcatgcaaaccggaggacgtggacaatctcctttcctttctaagacatcaactgttaactcaaagttactacctcaaggtagtggcggtattataagtggaagaaacagtgccctcgtgcatggaagtggtgctcctgctcggctgccaaaccttggtattagtacagaacccacatctcaaatcccttcgccggttaaacctgttgctgccatatcctctgagaaggcacaagctccagctccaaaattgaacacagatgagcttcgtcgtaaaactgttgcccttctggaggaatattttagtgttaggctcttggacgaggcattacagtgtgtggaggaacttaaagccccggcttattaccctgaggttatcaaggaggctatttcccttgcactagataaaagcccgccatgtgttgaacctgttgccaatctttttgagtatctgttcattaagaagataatttcagccagagacatagggaccgggtgcatgttatttgcttctctgctggatgatatcggcatagatttacctaaagcaccaaataattatggtgagataatagggaaactagttttggctaggggtttagattttaaagtggtaagagaaatccttaagaaggtggaagatgaccggttccagaaagcaataatgtcctctgcattgcaacaggtaattaactctgcatctgggcaagcggtgttggattcacaagcatctgatattgaggcctgccagagtctgttcaactga	2340	0.0	MQQSDQTVLSLRPGGGRGSRLVAPRFDSSSSTSSASPAFGSFSADLPLLRPHAGAPSPFSIKAGDSRFEGRERVRYTREQLLQLREGVEILDDVLKIKQDVEAEFFGEDQSWARSENNPSNQFQNRYSEPDTRDWRGRSGQLSGNADERSWDNLKENRDFGNTSQNRQDQLNSQFARAHISSNQAGGPTPTLVKAEVPWSAKRGTLSEKDRVLKTVKGFLDGHAFLGLNIWSCTFDXILNKLTPEKFDLLKGQLIDSGITSADILKGVISLIFDKAVLEPTFCPMYAQLCSDLNEKLPPFPSDEPGGKEITFKRVLLNNCQEAFEGAGKLREEVRQMTAPDQEMERRDKERLVKIRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGPPDSKVCPAEENVEAICQFFNTIGKQLDESPKSRRINDMYFIRLKELSTNPQLAPRLRFMVRDVLDLRSNNWIPRREEVKAKTITEIHSEAEKNLGLRPGATASGLMPGMPGNRRMPGIDNDNWEMPRTRSMPRGDMSGMQTGGRGQSPFLSKTSTVNSKLLPQGSGGIISGRNSALVHGSGAPARLPNLGISTEPTSQIPSPVKPVAAISSEKAQAPAPKLNTDELRRKTVALLEEYFSVRLLDEALQCVEELKAPAYYPEVIKEAISLALDKSPPCVEPVANLFEYLFIKKIISARDIGTGCMLFASLLDDIGIDLPKAPNNYGEIIGKLVLARGLDFKVVREILKKVEDDRFQKAIMSSALQQVINSASGQAVLDSQASDIEACQSLFN	779

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste6g03387	779	Gene3D	-	606	773	-	-
	Pste6g03387	779	FunFam	Eukaryotic translation initiation factor isoform 4G-2	230	459	-	-
	Pste6g03387	779	SMART	ma3_7	614	726	IPR003891	-
	Pste6g03387	779	MobiDBLite	consensus disorder prediction	111	128	-	-
	Pste6g03387	779	MobiDBLite	consensus disorder prediction	484	540	-	-
	Pste6g03387	779	SUPERFAMILY	ARM repeat	236	460	IPR016024	-
	Pste6g03387	779	FunFam	Eukaryotic translation initiation factor isoform 4G-2	607	769	-	-
	Pste6g03387	779	MobiDBLite	consensus disorder prediction	110	192	-	-
	Pste6g03387	779	Gene3D	-	234	471	-	-
	Pste6g03387	779	SMART	if4_15	232	458	IPR003890	GO:0003723\|GO:0005515
	Pste6g03387	779	PANTHER	EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA	51	763	IPR045208	GO:0003743
	Pste6g03387	779	Pfam	MA3 domain	614	725	IPR003891	-
	Pste6g03387	779	Pfam	MIF4G domain	237	458	IPR003890	GO:0003723\|GO:0005515
	Pste6g03387	779	SUPERFAMILY	ARM repeat	607	767	IPR016024	-
	Pste6g03387	779	MobiDBLite	consensus disorder prediction	1	45	-	-
	Pste6g03387	779	ProSiteProfiles	MI domain profile.	613	735	IPR003891	-
	Pste6g03387	779	MobiDBLite	consensus disorder prediction	24	40	-	-
	Pste6g03387	779	MobiDBLite	consensus disorder prediction	157	189	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste6g03387	Pste-Chr6	22587778	22595064	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste6g03387	1	777	Eukaryotic Initiation Factors Gene Family	AT5G57870	61.481	0.0	944

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste6g03387	6	22587778	22595064	Pste6g03387	6	22587778	22595064	ECH