Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g03377 atgatgtgtttgtttaaattaacagtatttctatttttctttctggacactgttcaatctagagttcaagggaaagaaaatgctgccttggtgaatggaaaaaattcacttacttcattcatgtcaggcattgtttccgaccctcaaaacgctctagagagttggaagtcacccggggttcatgtttgtgattggtcaggtgtaagatgcaacaatgcaagtgacatgatcatcgagcttgatctcagtggaaggtcacttggaggcaccatttcccctgcacttgctaacatctctaccttgcaaattcttgatctttctgagaactttttggtgggtcacattccaaaagaactaggctatttgggtcagcttggacaacttagtttgtctgggaattttcttgaggggcatattccctccgagtttggttcacttcacaacttgtactaccttgacatgggaagcaatcgtctagagggagagattccttcatcacttttttgtaatggaacttctctgagttatgtagacctctctaacaattccttagggggacaaatccccttgaaaaaagagtgtattcttaaagagctcaggttcctattactttggtctaacaagcttgtaggccagcttcctttagctctttcaaactctaccaagcttaaatggcttgatttggggttgaatatgttgagtggagagcttccttccaagattgtatctaattggccacaactacaatacctctacctgtcatataacaatttttctagccatgatggtaataccaaccttgaacctttctttgcctccttgatgagtttatcacactttcaggaacttgaattggcggcaaacaatcttggtgggaagctgcctcataatatcggtgatcttcccaccagcctgcaacaacttcacctgcaaaaaaatctcatacacggccctatacctccacatattgccaacctggtcaacctgactttcttgaagttatccagtaacctactaaatggatcaatccctcccagcctttgccttatgaataggttagaaagaatttatttgtcaaataattcgctatctggtgacattccttcaacccttagtgacatcaaacatctgggacttttagacttgtcaagaaacaagctatctggttcaataccagatagttttgcaaatctctcccagttaagaaggcttttactttatgataaccagctttctggaacaatcccaccaagtctgggaagttgtgtcaatttggagattttagacttatctcacaacaagataactggccagattcctgcagaagtagcagccttgggtagcttgaaactatacttgaatttatcaaacaataacttacatgggtctttaccgttagaactcagcaaaatggacatggtgctagttattgacgtatccatgaataacctctctggaagcatccctccacaactggaaagttgcacagcactggagtacctcaacctctctgtcaattcctttgaaggccttctcccatcttcgttaggcaaattgctctatatccgagtacttgacgtgtcttcaaatcaattgaaagggacaataccggagtccatgcagttgtcttcctctctcaaggaacttaatttctctttcaacaaattctcagggaaagtctcagacaagggagcattttcaaatcttaccatagactctttcctgggaaatactggtctctgtggccggtttaaaggcatgcataattgtcacagtagcaaacgtacttatcatttggtgttcttgttgattcctgtgttactatttggcacccctctcctgtgcatgttttttaggtactccatgacaatcaagtcaaaagtgagaaatcgattagcaatggttagaagaggtgatttggaggatgtagaagagggaacaaaagaccacaagtacccaagaatttcatatggacaacttagagaagccactggaggcttcagtgcttcaagcttaattggttcaggccggtttggacaggtctacgaagggatgctccaagatagtactagagtagctgtgaaggtgttggatacaacacatggtgagatttcaaggagctttagaagggaatatcaaatcctgaagaagataaggcacagaaatttaataaggatcattacaatttgctctagaccagaatttaatgcccttgtttttcccttgatgcaaaatggtagccttgagatgcacctatatccaagccaaaaattagatgtggttcaaatagtaaaaatctgcagtgatgtagccgagggaatgtcctatctgcaccattactctcctgtgaaagtagtgcattgtgatcttaagccaagcaatatactccttgatgaagatatgacagctttggttactgattttggaatttcgaggcttttacaaagtcatgggaatacatcctccactaactcaccagcatctttcagttcaacgcatggcttgttatgtggttcagttggttacatagctcctgaatacggaatgggaaaacatgcttcaactgagggtgatgtttacagttttggagtacttgtgttggagatggtctcaggtagacggcccacagatcatgtactaagccatgaagaaggatcaagcttgtgtgagtgggtaaaaaaacaatacacacacccaaaccagcttcaaaactttgttgaacaagcactcaaaaggtgctctccttgtggcgtgccaacccattgtaacaaaatttggaaagatgttatatttgaactcattgagctaggactactctgcacacagcacaatccttcaacaagaccaagcatgcacgatatagcccaagaaatcggaaggttgaaggattatctcactaagtcaaccttgccccttcatcaataa 2925 0.0 MMCLFKLTVFLFFFLDTVQSRVQGKENAALVNGKNSLTSFMSGIVSDPQNALESWKSPGVHVCDWSGVRCNNASDMIIELDLSGRSLGGTISPALANISTLQILDLSENFLVGHIPKELGYLGQLGQLSLSGNFLEGHIPSEFGSLHNLYYLDMGSNRLEGEIPSSLFCNGTSLSYVDLSNNSLGGQIPLKKECILKELRFLLLWSNKLVGQLPLALSNSTKLKWLDLGLNMLSGELPSKIVSNWPQLQYLYLSYNNFSSHDGNTNLEPFFASLMSLSHFQELELAANNLGGKLPHNIGDLPTSLQQLHLQKNLIHGPIPPHIANLVNLTFLKLSSNLLNGSIPPSLCLMNRLERIYLSNNSLSGDIPSTLSDIKHLGLLDLSRNKLSGSIPDSFANLSQLRRLLLYDNQLSGTIPPSLGSCVNLEILDLSHNKITGQIPAEVAALGSLKLYLNLSNNNLHGSLPLELSKMDMVLVIDVSMNNLSGSIPPQLESCTALEYLNLSVNSFEGLLPSSLGKLLYIRVLDVSSNQLKGTIPESMQLSSSLKELNFSFNKFSGKVSDKGAFSNLTIDSFLGNTGLCGRFKGMHNCHSSKRTYHLVFLLIPVLLFGTPLLCMFFRYSMTIKSKVRNRLAMVRRGDLEDVEEGTKDHKYPRISYGQLREATGGFSASSLIGSGRFGQVYEGMLQDSTRVAVKVLDTTHGEISRSFRREYQILKKIRHRNLIRIITICSRPEFNALVFPLMQNGSLEMHLYPSQKLDVVQIVKICSDVAEGMSYLHHYSPVKVVHCDLKPSNILLDEDMTALVTDFGISRLLQSHGNTSSTNSPASFSSTHGLLCGSVGYIAPEYGMGKHASTEGDVYSFGVLVLEMVSGRRPTDHVLSHEEGSSLCEWVKKQYTHPNQLQNFVEQALKRCSPCGVPTHCNKIWKDVIFELIELGLLCTQHNPSTRPSMHDIAQEIGRLKDYLTKSTLPLHQ 974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g03377 974 SMART serkin_6 667 965 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste6g03377 974 Pfam Leucine Rich Repeat 498 519 IPR001611 GO:0005515
Pste6g03377 974 SMART LRR_typ_2 398 422 IPR003591 -
Pste6g03377 974 SMART LRR_typ_2 146 170 IPR003591 -
Pste6g03377 974 SMART LRR_typ_2 196 220 IPR003591 -
Pste6g03377 974 SMART LRR_typ_2 122 145 IPR003591 -
Pste6g03377 974 SMART LRR_typ_2 446 471 IPR003591 -
Pste6g03377 974 SMART LRR_typ_2 277 301 IPR003591 -
Pste6g03377 974 SMART LRR_typ_2 374 397 IPR003591 -
Pste6g03377 974 SMART LRR_typ_2 326 350 IPR003591 -
Pste6g03377 974 ProSiteProfiles Protein kinase domain profile. 667 965 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste6g03377 974 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 70 269 - -
Pste6g03377 974 ProSitePatterns Serine/Threonine protein kinases active-site signature. 785 797 IPR008271 GO:0004672|GO:0006468
Pste6g03377 974 Gene3D Phosphorylase Kinase; domain 1 646 741 - -
Pste6g03377 974 Pfam Leucine rich repeat 352 411 IPR001611 GO:0005515
Pste6g03377 974 Gene3D Transferase(Phosphotransferase) domain 1 743 969 - -
Pste6g03377 974 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 371 594 - -
Pste6g03377 974 ProSiteProfiles Leucine-rich repeat profile. 247 268 IPR001611 GO:0005515
Pste6g03377 974 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 271 367 - -
Pste6g03377 974 ProSiteProfiles Leucine-rich repeat profile. 424 446 IPR001611 GO:0005515
Pste6g03377 974 ProSitePatterns Protein kinases ATP-binding region signature. 673 695 IPR017441 GO:0005524
Pste6g03377 974 PANTHER RECEPTOR-LIKE PROTEIN 55 313 959 - -
Pste6g03377 974 Pfam Leucine rich repeat N-terminal domain 35 71 IPR013210 -
Pste6g03377 974 Gene3D Ribonuclease Inhibitor 24 194 IPR032675 -
Pste6g03377 974 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 743 970 - -
Pste6g03377 974 Pfam Leucine Rich repeat 422 437 IPR001611 GO:0005515
Pste6g03377 974 SUPERFAMILY RNI-like 79 364 - -
Pste6g03377 974 CDD STKc_IRAK 673 961 - -
Pste6g03377 974 SUPERFAMILY L domain-like 334 582 - -
Pste6g03377 974 SUPERFAMILY Protein kinase-like (PK-like) 649 956 IPR011009 -
Pste6g03377 974 Gene3D Ribonuclease Inhibitor 195 593 IPR032675 -
Pste6g03377 974 Pfam Protein kinase domain 669 956 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g03377 Pste-Chr6 22457534 22467988 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g03377 46 970 Receptor kinase-like Gene Family AT5G20480 32.419 1.13e-145 458
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Pste6g03377 Pkinase 4.1e-45 CL0016