Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g03364 atggccaaaacatcacagctgcgttcccagaaactcaatgctggtaatgacaataataaccttaactcaaccaacactgtcacctctactaaggtgaaacgaacaaggagaagtgtccctagagactccccacctcaacgcagctcaatataccgaggagtcactaggcaccggtggacaggccgatacgaggctcatttgtgggacaagaattgctggaatgaaacacagaacaaaaaaggacgacaaggagcttatgacaatgaagaggcggcagcacatgcttatgatctagcagcactgaaatactggggtcaagataccattcttaattttccgttaacgaactacctgaacgaactgaaagaaatggagggtcagtcacgggaggaatatattggatcgctgaggaggaaaagcagtggtttttctcgagggatttctaaataccgaggtgtcgcaagacatcatcacaacggaaggtgggaagctcggattggcagagtttttggcaataaatatctttatctcggaacttatgctacccaagaagaagctgctactgcctacgatctggcagctatcgaataccgtggactcaatgctgtgaccaatttcgatctaagccgttacattaagtggcttaagcccaacaatagtgaccagaatagcattaatcctactcacataaacaataactgcactatcaatgacttcatcccaaaccccaataaagaagaactagaatttagcctgttccacaacaaccaggattcactcaataataacaataatattgtagaagaagccacgttggtgccacatcagccacgtccagcaggtgccacgtcagcattggggcttctacttcagtcatccaagttcaaggaaatgatggagatgacatctgtagcaaacctgtcaacaccactggaatctgagttgccacagtgcacatttcctgatcacattcagacgtactttgagtatgaagattcgaatagatatgaggaaggggatgatctcatgttcaagttcaacgagttcagttccattgtgccttcttaccattgtgacgagttcgagagttga 1092 0.0 MAKTSQLRSQKLNAGNDNNNLNSTNTVTSTKVKRTRRSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNETQNKKGRQGAYDNEEAAAHAYDLAALKYWGQDTILNFPLTNYLNELKEMEGQSREEYIGSLRRKSSGFSRGISKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDLAAIEYRGLNAVTNFDLSRYIKWLKPNNSDQNSINPTHINNNCTINDFIPNPNKEELEFSLFHNNQDSLNNNNNIVEEATLVPHQPRPAGATSALGLLLQSSKFKEMMEMTSVANLSTPLESELPQCTFPDHIQTYFEYEDSNRYEEGDDLMFKFNEFSSIVPSYHCDEFES 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g03364 363 SMART rav1_2 50 119 IPR001471 GO:0003700|GO:0006355
Pste6g03364 363 SMART rav1_2 149 213 IPR001471 GO:0003700|GO:0006355
Pste6g03364 363 SUPERFAMILY DNA-binding domain 148 209 IPR016177 GO:0003677
Pste6g03364 363 MobiDBLite consensus disorder prediction 1 49 - -
Pste6g03364 363 FunFam AP2-like ethylene-responsive transcription factor 148 209 - -
Pste6g03364 363 FunFam AP2-like ethylene-responsive transcription factor 49 115 - -
Pste6g03364 363 MobiDBLite consensus disorder prediction 1 33 - -
Pste6g03364 363 Gene3D AP2/ERF domain 50 115 IPR036955 GO:0003700|GO:0006355
Pste6g03364 363 Gene3D AP2/ERF domain 148 209 IPR036955 GO:0003700|GO:0006355
Pste6g03364 363 ProSiteProfiles AP2/ERF domain profile. 50 113 IPR001471 GO:0003700|GO:0006355
Pste6g03364 363 ProSiteProfiles AP2/ERF domain profile. 149 207 IPR001471 GO:0003700|GO:0006355
Pste6g03364 363 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 23 226 - -
Pste6g03364 363 SUPERFAMILY DNA-binding domain 49 114 IPR016177 GO:0003677
Pste6g03364 363 CDD AP2 148 209 IPR001471 GO:0003700|GO:0006355
Pste6g03364 363 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700|GO:0006355
Pste6g03364 363 PRINTS Ethylene responsive element binding protein signature 189 209 IPR001471 GO:0003700|GO:0006355
Pste6g03364 363 Pfam AP2 domain 148 199 IPR001471 GO:0003700|GO:0006355
Pste6g03364 363 Pfam AP2 domain 50 105 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g03364 Pste-Chr6 22342430 22345318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g03364 46 280 AP2-EREBP Transcription Factor Family AT5G57390 55.785 5.16e-86 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Pste6g03364 AP2 2.6e-09 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g03364 6 22342430 22345318 Pste6g03364 6 22342430 22345318 ECH