Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g03355 atgctgtgtgtctgtccctgttccatcatcatgggtctccactatctcctcctcctcctcctgctctttctttcacgccacactctttcttccgcttcccagcctcgcaaccccgaagttgaggctttgatcaccatcaagtcctctctcgatgatccccacggcgtcctcaacaactgggacgagtactccgtcgacgcctgcagttgggccatgatcacttgctcctccgattaccttgtcgtcggcctgggagctcccagtcaatctctctccggaactttatctcctgcaatcggaaacctaacaaatcttcgacaagtgttacttcagaacaacaatatctcaggcaatataccaccggaacttggagcccttcccaagcttcagacattagacctatccaataaccggttttccggcttcattcctgcttctctcagtcaattgaatagtctacagtacctgaggctcaacaacaataatttgtccggatcctttcccgtgtcactggcaaaaaccccacagcttgctttcttggacttgtcttataacaatctcagtggaccattgcccaagttcccagccaggtcattcaagtatggtttctcttcttactctcccgttattgtgggcaacccattagtttgtggaagcagcactaatgaaggttgctctgggtccgcaacccttatgcccatttctttctcacaagtgtcatcagaaggaaaacacaaatccaaaaggctagccatagcacttggggtcagtcttagttgtgcttctctcatcctcttgttttttgggctattttggtatagaaagaaacgacagcacggagccatcctgtatatcagtgattataaggaagagggagttcttagcttgggaaatctaaaaaaattcaatttcagagagctccagcatgcgacggataatttcagctccaggaatatacttggtgctggaggttttggaaatgtctacagggggaaacttggagatggtacgatggtggcagtgaaaaggttgaaagatgtaaacggtagtgccggtgaatctcagttccaaacagagttggagatgatcagcttggctgttcatcgcaatttactgcgattaattggatattgtgctactcctaatgagaaacttttggtttatccttatatgtctaatggcagtgtggcctccaggcttcgaggcaaaccagctttagattggaacacaagaaagagaatagcaattggagctgccaggggccttctgtatttgcacgagcaatgtgatccaaagataatacacagagatgtaaaggctgctaatgtgcttctagatgactattgtgaggcagttgttggtgattttggccttgcaaagctccttgaccattccgattcccatgtcactactgctgtacgtggtactgttggacacattgcaccagagtacctatccactggtcaatcatctgagaaaacagatgtatttggatttggcattctcttgttagagctcattaccggaatgacagcactagagtttgggaaaacagtgaatcaaaaaggagctatgctagaatgggttaggaaaatactacatgaaaagagagtttcagtgttggtggacaaagaactaggagacaattatgatagaatagaggtgggcgagatgttgcaagttgctttactctgtactcaatatttgacagcccaccgacctaaaatgtctgaagtggttcgaatgctcgaaggggacgggcttgctgagaagtgggcggcatcacataattatggcaatcacgacatgaaccccggccacagcaacaatagcaatacttcatcccgccctacctcggcttcaaaacatgatgatgatgttcacgatcgttccagcatgtttggcatgacaatggatgatgatgatgaacagtctttggaatcctatgccatggaactctctggtcctagataa 1974 0.0 MLCVCPCSIIMGLHYLLLLLLLFLSRHTLSSASQPRNPEVEALITIKSSLDDPHGVLNNWDEYSVDACSWAMITCSSDYLVVGLGAPSQSLSGTLSPAIGNLTNLRQVLLQNNNISGNIPPELGALPKLQTLDLSNNRFSGFIPASLSQLNSLQYLRLNNNNLSGSFPVSLAKTPQLAFLDLSYNNLSGPLPKFPARSFKYGFSSYSPVIVGNPLVCGSSTNEGCSGSATLMPISFSQVSSEGKHKSKRLAIALGVSLSCASLILLFFGLFWYRKKRQHGAILYISDYKEEGVLSLGNLKKFNFRELQHATDNFSSRNILGAGGFGNVYRGKLGDGTMVAVKRLKDVNGSAGESQFQTELEMISLAVHRNLLRLIGYCATPNEKLLVYPYMSNGSVASRLRGKPALDWNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDYCEAVVGDFGLAKLLDHSDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGMTALEFGKTVNQKGAMLEWVRKILHEKRVSVLVDKELGDNYDRIEVGEMLQVALLCTQYLTAHRPKMSEVVRMLEGDGLAEKWAASHNYGNHDMNPGHSNNSNTSSRPTSASKHDDDVHDRSSMFGMTMDDDDEQSLESYAMELSGPR 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g03355 657 SUPERFAMILY L domain-like 36 197 - -
Pste6g03355 657 Gene3D Phosphorylase Kinase; domain 1 284 390 - -
Pste6g03355 657 SUPERFAMILY Protein kinase-like (PK-like) 297 584 IPR011009 -
Pste6g03355 657 FunFam Somatic embryogenesis receptor kinase 1 284 390 - -
Pste6g03355 657 MobiDBLite consensus disorder prediction 619 637 - -
Pste6g03355 657 FunFam Putative LRR receptor-like serine/threonine-protein kinase 36 227 - -
Pste6g03355 657 MobiDBLite consensus disorder prediction 601 618 - -
Pste6g03355 657 MobiDBLite consensus disorder prediction 596 657 - -
Pste6g03355 657 Pfam Leucine rich repeat N-terminal domain 37 76 IPR013210 -
Pste6g03355 657 Pfam Protein kinase domain 316 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste6g03355 657 ProSitePatterns Protein kinases ATP-binding region signature. 320 342 IPR017441 GO:0005524
Pste6g03355 657 ProSiteProfiles Protein kinase domain profile. 314 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste6g03355 657 Pfam Leucine rich repeat 127 187 IPR001611 GO:0005515
Pste6g03355 657 SMART serkin_6 314 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste6g03355 657 ProSitePatterns Serine/Threonine protein kinases active-site signature. 433 445 IPR008271 GO:0004672|GO:0006468
Pste6g03355 657 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 15 594 - -
Pste6g03355 657 Gene3D Transferase(Phosphotransferase) domain 1 391 601 - -
Pste6g03355 657 FunFam Somatic embryogenesis receptor-like kinase 1 391 603 - -
Pste6g03355 657 Gene3D Ribonuclease Inhibitor 36 227 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g03355 Pste-Chr6 22201314 22206186 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g03355 15 657 Receptor kinase-like Gene Family AT5G16000 62.519 0.0 786
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Pste6g03355 Pkinase 2.2e-41 CL0016