Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g03319 atgggcaggagtgaagtctttgtgcgtccaccagaacagcctccatattttctctcacaaccaaatccaccttttcctcccactgttcgatctgatagtttcagtttgaacgatagagccttgaaggttagtccgagcatccttctgataattataattctggctattgttttcttcatttctggtttgctgcacctactggttagatttctatggagaccccaagctagagagcctgatgatttggacaatgtcactgctctccagggccaattgcagcaactcttccacctccatgatgctggggttgaccagtccttcattgacactctccctgtgttcctctacaaggccatcataggactcaagaacccatttgattgtgccgtttgtttgtgtgagtttgagcctgaggacaagctcaggttgctgccaaaatgtagccacgcttttcacatggagtgtattgacacctggctcttgtctcattctacttgtcctctttgtagagccagcttgctccctgaattctctgcaagcaacgcatgttctcccattgttcttgtcctagaatctgggagtgagagttcccgggaaattgttcctgaaagagaggctgctgttggaaggtctagttcggttatgaccacaaattctcgtcttggttgccgtggagatagtgaatttggatcaacccgtgtggatttgaaatcaggggagttattgagtgaaactcctgatccaacagtgccaaatggtgtggaaaaagtggttaccgttaagctggggaagtttaaaagtgtggacggtggaggagaaggttgggaagggagtagtagtaccaacaacgtggatgctagaaggtgtttttccatggggtcatttgcttatgtcatggatgagagttcttcattgcaagtacccataagaaccccaatcaagaagcaatcaagtaagaagaaatctggtctgcctttgactccagggcacaggcctgcgatgtcagaatgtgactgtgaatctagaagggattttaagtttgcaggctttgatgcaactatagttgaggatgatgctgctagtactggggcagctaatgcaagtactacttgtaatgggaatagtgcttccataggagggagcagaaaggagagcttttctatatcaaagatttggcttagggggaagaaggataagccaaatgcagtgggggattcgactagaagggctgtttcatttcgcttcccagccaagtcaagtgttgttgctgcttctggcagcgttgatgatgattttaagagcaagaattttaagtttgatacaaggagtacgatttctgagatggatattgggaagtgggaaaatggaggaagtgaattcgattatgatgaggaaaatcagagttgttatagtatggattcttctcatgctagagcgccatcttttgctagaaggactttgctttggctcacaggaggaagacagaacaaggttgttcactctgcttccaacctctag 1518 0.0 MGRSEVFVRPPEQPPYFLSQPNPPFPPTVRSDSFSLNDRALKVSPSILLIIIILAIVFFISGLLHLLVRFLWRPQAREPDDLDNVTALQGQLQQLFHLHDAGVDQSFIDTLPVFLYKAIIGLKNPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLLPEFSASNACSPIVLVLESGSESSREIVPEREAAVGRSSSVMTTNSRLGCRGDSEFGSTRVDLKSGELLSETPDPTVPNGVEKVVTVKLGKFKSVDGGGEGWEGSSSTNNVDARRCFSMGSFAYVMDESSSLQVPIRTPIKKQSSKKKSGLPLTPGHRPAMSECDCESRRDFKFAGFDATIVEDDAASTGAANASTTCNGNSASIGGSRKESFSISKIWLRGKKDKPNAVGDSTRRAVSFRFPAKSSVVAASGSVDDDFKSKNFKFDTRSTISEMDIGKWENGGSEFDYDEENQSCYSMDSSHARAPSFARRTLLWLTGGRQNKVVHSASNL 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g03319 505 MobiDBLite consensus disorder prediction 312 335 - -
Pste6g03319 505 FunFam RING-H2 finger protein ATL46 90 175 - -
Pste6g03319 505 CDD RING-H2_EL5-like 127 170 - -
Pste6g03319 505 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 42 392 - -
Pste6g03319 505 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 175 IPR013083 -
Pste6g03319 505 Pfam Ring finger domain 127 170 IPR001841 -
Pste6g03319 505 SUPERFAMILY RING/U-box 107 177 - -
Pste6g03319 505 ProSiteProfiles Zinc finger RING-type profile. 128 170 IPR001841 -
Pste6g03319 505 SMART ring_2 128 169 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g03319 Pste-Chr6 21719824 21721815 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g03319 35 505 C3H Transcription Factor Family AT2G18650 46.531 7.25e-102 310
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g03319 6 21719824 21721815 Pste6g03319 6 21719824 21721815 ECH