Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pste6g03318 | atgcctcgtctcacagatccccaatctcaatctcaatctcaatctcaatctcaaccaaagccaaatcccaatctcctctccctcttcctcaaacccatcatcatgctccttctcacctccctcttcttcctcttcctgggcttcgccgccttcctcctcctccacctcttcctcctaggcagtgccttccaccgcctccgctaccgccccgccgccgccgccaccaccgttcccacctccaccggcctcccccttctcgaaatcaacaagctcccccgctttcgggtcgccaagggtcccgactcccattgcgttgtctgcttggacgccttccgctacggacagtgctgccgaaagctcgccgcctgcggccacctatttcaccgcagatgcgtcgacacctggctcctcaaggtcgccgcctgccccacgtgccgcacacccgtgcgattcaatgcccctgcccccacacaatcttctccttcctccccaatttttgcctgcgccactgccactgccactgccacttctcacaccacccttttatag | 549 | 0.0 | MPRLTDPQSQSQSQSQSQPKPNPNLLSLFLKPIIMLLLTSLFFLFLGFAAFLLLHLFLLGSAFHRLRYRPAAAATTVPTSTGLPLLEINKLPRFRVAKGPDSHCVVCLDAFRYGQCCRKLAACGHLFHRRCVDTWLLKVAACPTCRTPVRFNAPAPTQSSPSSPIFACATATATATSHTTLL | 182 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pste6g03318 | 182 | SUPERFAMILY | RING/U-box | 97 | 153 | - | - | |
| Pste6g03318 | 182 | SMART | ring_2 | 104 | 145 | IPR001841 | - | |
| Pste6g03318 | 182 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Pste6g03318 | 182 | Pfam | Ring finger domain | 103 | 146 | IPR001841 | - | |
| Pste6g03318 | 182 | ProSiteProfiles | Zinc finger RING-type profile. | 104 | 146 | IPR001841 | - | |
| Pste6g03318 | 182 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE ATL42 | 8 | 156 | - | - | |
| Pste6g03318 | 182 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 74 | 151 | IPR013083 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pste6g03318 | 20 | 160 | C3H Transcription Factor Family | AT2G18670 | 39.726 | 3.15e-28 | 102 |