LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste6g03283	atgtcaaaagttgagttggccggccaaagtcgttcggccggcaagtacaagccaacatcatttggcgtagttcacaattcatggagaatattcacatacaaggagttgcatgtggctaccaacggattcagtgatgataataagcttggtgaaggtggttttggaagtgtctactggggaagaaccaacgacggtctgcagatagcggtgaaaaaactgaaagcaatgaactcaaaggcagagatggaatttgctgtagaagttgaagttcttggaagggtgaggcacaaaaatttgctgggtcttaggggctattgtgttggggatgatcaacggctcatagtctatgattacatgccaaatctcagcctcctttctcatctccatggccagtttgctgttgaagtgcaactcacttggcaaaggagaatgaaaattgcaattggctctgctgaaggccttctgtacttgcacagtgaggtcacaccccacatcattcatagggacataaaagcaagtaatgtgcttctgaattcagactttgaacctctagttgcggattttgggtttgcaaagctaatccctgaaggagttagccacatgactacccgtgtgaaaggtacattgggatacttggcacctgaatatgccatgtggggaaaggtctctgaaagttgtgatgtctatagctttggaattcttctcttagaacttgtaactggtagaaagcccatagagaagctcccgggtgggcttaagaggacaataactgaatgggccgagcctctaataactaatggaaggttcaaggacttggttgatccaaaactcagaggtaacttcgatgaaaacgaagtcaaacaagcagtcaatgtggctgctctttgtgtgcaaaatgagcctgagaaacggcccaacatgaagcaagtggttaaccttctgaaagggtctgaatatgaagagaagaaagtcatcacggcgttgaggatagatagtgccaagtataatgaagaattattggcacttgatcaacctagtgatgatgatcatgatgatgcaaccgctagctatggtgtttttagtgccattgaagtccaaaagatgaaggatccgtacaagagaatgggctaa	1131	0.0	MSKVELAGQSRSAGKYKPTSFGVVHNSWRIFTYKELHVATNGFSDDNKLGEGGFGSVYWGRTNDGLQIAVKKLKAMNSKAEMEFAVEVEVLGRVRHKNLLGLRGYCVGDDQRLIVYDYMPNLSLLSHLHGQFAVEVQLTWQRRMKIAIGSAEGLLYLHSEVTPHIIHRDIKASNVLLNSDFEPLVADFGFAKLIPEGVSHMTTRVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLELVTGRKPIEKLPGGLKRTITEWAEPLITNGRFKDLVDPKLRGNFDENEVKQAVNVAALCVQNEPEKRPNMKQVVNLLKGSEYEEKKVITALRIDSAKYNEELLALDQPSDDDHDDATASYGVFSAIEVQKMKDPYKRMG	376

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste6g03283	376	ProSiteProfiles	Protein kinase domain profile.	43	320	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste6g03283	376	CDD	STKc_IRAK	49	316	-	-
	Pste6g03283	376	SMART	serkin_6	43	314	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste6g03283	376	FunFam	PTI1-like tyrosine-protein kinase At3g15890	16	118	-	-
	Pste6g03283	376	FunFam	PTI1-like tyrosine-protein kinase At3g15890	119	331	-	-
	Pste6g03283	376	SUPERFAMILY	Protein kinase-like (PK-like)	27	318	IPR011009	-
	Pste6g03283	376	PANTHER	OS01G0253100 PROTEIN	26	319	-	-
	Pste6g03283	376	Pfam	Protein tyrosine and serine/threonine kinase	46	314	IPR001245	GO:0004672\|GO:0006468
	Pste6g03283	376	Coils	Coil	63	83	-	-
	Pste6g03283	376	ProSitePatterns	Protein kinases ATP-binding region signature.	49	72	IPR017441	GO:0005524
	Pste6g03283	376	Gene3D	Transferase(Phosphotransferase) domain 1	119	336	-	-
	Pste6g03283	376	Gene3D	Phosphorylase Kinase; domain 1	17	118	-	-
	Pste6g03283	376	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	165	177	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste6g03283	Pste-Chr6	21248928	21250900	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste6g03283	8	367	Trihelix Transcription Factor Family	AT1G70460	44.415	3.69e-98	305

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-XV	Pste6g03283		PK_Tyr_Ser-Thr	3.4e-44	CL0016