Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g03278 atgggaattgaaagaggagggttgaaggggttcaggagcggctggagtgtgccgccaaagccatgcgactcgtgcaagctggcttcggcggcgcttttctgccgccccgattccgcgtttctctgcatagcttgcgactccaagattcactgcgccaacaaggtagcttcgcggcacgagcgcgtgtggatgtgtgaagtgtgcgagcaggccccagctgcagtcacgtgcaaggcagacgcagccgccctctgcatcacgtgcgactcagacatccactccgccaatcccctggcgcggcgccacgagcgcgtccccgtcgagcccttcttcgactccgccgagtccatcgtgaaggcgtccgccgcggcctcctttgggttcatcgtcccctcggacgacggggcggggtccgacgccttcgccacggacgacgcggcgtggctcatcccgaatcccaatttcgggtccaaactgatggacgcccctgacataaagtccaaggagatgttcttctccgaaatggaccccttcctggactttgattactcaaactccttccaaaacaacaacagccccggaaacgacagcgtcgttccagttcaaaccaaaccctcactcgctcctcccctcatcaataataaccaccaatcagacacttgctttgacatcgatttttgccgttccaagctttcctcctttaactacccatcccagtctcttagccaaagcgtttcgtcctcgtcgcttgatgttggagtagtgcctgatgggaacacggtgtcggacatgtcgtactcgtttggtcggaacagttcggattctagtggaattgtggtatcgggagtaagtgggggccaaggggcgacgcagttgtgtggaatggatcgtgaagccagggtgctgcgatacagagagaagaggaagaaccgaaaattcgagaagactattcgatacgcttcgcgaaaggcttatgctgaaacccgccccaggataaaaggccgcttcgccaaacgtaccgaaattgactccgacgtggaccgtctctatagccctgccgttactgccctcatgctcgacactcaatacggcgtcgtgccttccttttag 1110 0.0 MGIERGGLKGFRSGWSVPPKPCDSCKLASAALFCRPDSAFLCIACDSKIHCANKVASRHERVWMCEVCEQAPAAVTCKADAAALCITCDSDIHSANPLARRHERVPVEPFFDSAESIVKASAAASFGFIVPSDDGAGSDAFATDDAAWLIPNPNFGSKLMDAPDIKSKEMFFSEMDPFLDFDYSNSFQNNNSPGNDSVVPVQTKPSLAPPLINNNHQSDTCFDIDFCRSKLSSFNYPSQSLSQSVSSSSLDVGVVPDGNTVSDMSYSFGRNSSDSSGIVVSGVSGGQGATQLCGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEIDSDVDRLYSPAVTALMLDTQYGVVPSF 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g03278 369 ProSiteProfiles Zinc finger B-box type profile. 17 64 IPR000315 GO:0008270
Pste6g03278 369 CDD Bbox1_BBX-like 65 107 - -
Pste6g03278 369 Pfam B-box zinc finger 62 107 IPR000315 GO:0008270
Pste6g03278 369 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 21 352 IPR045281 GO:0009909
Pste6g03278 369 ProSiteProfiles CCT domain profile. 297 339 IPR010402 GO:0005515
Pste6g03278 369 CDD Bbox1_BBX-like 21 64 - -
Pste6g03278 369 Pfam CCT motif 297 339 IPR010402 GO:0005515
Pste6g03278 369 ProSiteProfiles Zinc finger B-box type profile. 60 107 IPR000315 GO:0008270
Pste6g03278 369 SMART bboxneu5 17 64 IPR000315 GO:0008270
Pste6g03278 369 SMART bboxneu5 65 107 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g03278 Pste-Chr6 21187437 21189091 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g03278 1 369 C2C2-CO-like Transcription Factor Family AT5G57660 56.349 3.37e-126 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Pste6g03278 zf-B_box 2.4e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g03278 6 21187437 21189091 Pste6g03278 6 21187437 21189091 ECH