Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g03242 atgaatttccatcccaacacttctcttcacctaagccaaccagatgatgagatcaatcatctgaatctagatcttcttcttgagccatcttcttcttcatcatcttctccttcacctgttagtcccattgagccacggatattctcatgcaactattgccagagaaagttctatagctctcaagcacttggaggtcaccaaaacgcccacaagcttgaaaggacactggctaagaagagcagggaaatgacttcaaccatgcaatcttttggggtagctgaacaaagatcaaacttcagcgcttcacaacaccttggtcgtgctcttggggttgtggataaccaaggacaaagttgtgtgaggcttggtggaagaaaagagttcagttatggtcccaaggaaggtgtgccttcctggtcaaggggttatgcttctgaacatgttcaggaggatattggccaacttgacttgtcgttgaggctctga 486 0.0 MNFHPNTSLHLSQPDDEINHLNLDLLLEPSSSSSSSPSPVSPIEPRIFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSREMTSTMQSFGVAEQRSNFSASQHLGRALGVVDNQGQSCVRLGGRKEFSYGPKEGVPSWSRGYASEHVQEDIGQLDLSLRL 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g03242 161 FunFam Zinc finger protein 2 27 95 - -
Pste6g03242 161 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 13 100 IPR044246 GO:0009788
Pste6g03242 161 ProSiteProfiles Zinc finger C2H2 type domain profile. 48 75 IPR013087 -
Pste6g03242 161 SUPERFAMILY beta-beta-alpha zinc fingers 45 75 IPR036236 -
Pste6g03242 161 Gene3D Classic Zinc Finger 36 106 - -
Pste6g03242 161 ProSitePatterns Zinc finger C2H2 type domain signature. 50 70 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g03242 Pste-Chr6 20784609 20785684 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g03242 1 161 C2H2 Transcription Factor Family AT5G57520 47.619 1.11e-30 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pste6g03242 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g03242 6 20784609 20785684 Pste6g03242 6 20784609 20785684 ECH