Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g03208 atgaagccaaaaaagatggatgaagggtggacggagggaaggagaagaaaggacgccgacagaggaaggcaatcaagtcgcgaggaaggaaaaggaatgaggcatataacatctgtttatttcactcattttcctgaagagtatatggtaaaaaatatgtgggagatatttggaagatatgctaacattcacgatgtggtaattccaaacaaaaggaacaggaggggacagaggtttggtttcgctagatttagggaggtagaggatgtgaaaatgctggtggtaaaattggacaatattttcattggaaaggaaaagttgtgggtcaatctaccacggcgaacggtgcaacaaatagcatttaatgaaagcttgaggaaatcatatgcatcggtagtacgtgctcctggaggacttaaacataagaacgagcgaaaggaggcaggagagacagaagatgtgaaaatgcagatggtgttcaaagcaccagtggaggaggtcattcggcttcaaagggcttatatgggagaagtacgaaacagagggagtgcttttaggacgcaattattccttatggctcatggaatatacagtgtacgcacaactcccatgggggcaaacaaggtactgctggagctggaagagggggagacactccaagagatcatgaagggcaaacaaatgtggttcgaccaatggtttgccgggatacagaagtgggagccgagatctgttgacacggaaaggagggtcaaggtgaactgttacggtatccctttacatgtttggggagaaaatttcttctataacttactcgcaccatttggagacctgttgtatgtggatgaagctactttaagaaaagagagagtgatggaggtggaagatgtggatgagtcaaagcaaagccgagataacaaaactagctacggttcggaaatgagctcctgtcagggggaggaagactttgacgaatcggtcgaggcggaaagaaggttggctgagctgaaacaagagatgttccagaaagggaactggaaggtgagcaatgaggttgacggtaggagcgccgaacgcggtggtccggttttccagcaaggcggagaaacggtggtcaacgacacacatgggtctaactccggaagaagggcttcagaggtaccgatgaagcaaataggtgtgggggtaggttacagtaggaatgctactgagcaggatggtcaggagagggcaagcgtaggtgcgaatggaggggaaaacgaaatgggcagcgagtttcaaggcacggaacgtgctgcacggggctcgatacctgacagcttcgtcatgtgggataatgatgaagcaacggacacggagcaggggaaaggtcagcacattcgaagtttgaacgagtatcttgggccatcaggtaacatgggtcgggctgcgatatttcaacaccagaagaggtgtccagagaaggggaagggcaaagaagggaggatggtgaatgaatgggaagttaaggagatttgggggtcgatagggtgtgattggagaatattgccatcaacagggctcagtggagggtgtctgacaatctggaagaaacatatgttggaagttgtttgggagatacaagggcggagctttcttggaattggatttagaggaaagaatgcaactaaagttaattgtgtggtcaatgtatatgctccatgttcgttagaagggaaaaggaaggtatgggatgatctgatgatgacaaaacgaggatttctggaggttaattgggtactcgggggagattttaacgctgtggtggataggcgtgagttcaaagggagatcaaattatcactctagaactgagatgtctgactttaaattctttatccaaacaatgggtctgttggatattccagtcgtcaggaaaggagtaacgtggatagccccgaatggagaatcatctagcaggttggatcgttttttgttttccccggatctgatggaggagtggggagttatagctcaaagggagccagattttatggaattggtgaaagagttcaggacattagaacagagtcaaggatggaggatgtatcagctagcaagcaaattaaaaggcttgaagatgaagattaaaaagtggaaagaagagaattggggtaaagatgagaaattcctggcagagaaggtattagaattggagactatggatcaacagttaggccaaggggtcagtggaagtgttaaatcagacgcgggttggttggagggagttcagaatatccgagattatgtgttaaatcacttcacagagttctttactgaggaagaagaagggaaaccaaagatggatgaggtgcattttaatcaactaaatgagcatcagagagaaatgctggaggagccttttgcagctgaagagataaaggaggtggtatgggcatgtgagggagggaaaagtccgggccttgacagatttggttttaatttttataaatcatgttgggaaatcataagggaggatgtggtgaaggcagtacaagaattccatcagtcaggcacactaccaagaggagcgacatcatcttttcttaccttgattcccaaggtggcaacgccggacaggttagctcagtatagaccaatctctttaatttcaagcatccaaaatattgtctctaaactgctgccgttaagaatgaagaaagtcatgggggaattaatatctaagtgccagtcagcattcctgccaggtagatcgatcctatatggggtactggtagcgaatgagatagttgattgggctaaacggaaaaggaaaccctgttttttgtttaaggtggatttccaaaaggcttatgatttggtcaattggaattttctggattatatgttggctaggatggggtttgggagaagatggagaaagtggatgaacagtattgtcaggaatagccatgtgtcaattctagtaaatgggagtccaactgatgaatttagaccagggagaggtttgaagcagggatacccactttcaccctttttgtttctagtggtagctgaagctttatctggactattcaggtcagcagttgaaaaaggggtgttcaaagagctcaatattggtgacgaggcaaagttttcaatattgcaatatgcagatgatgttattatgatgggggaagccgatttgcaatcagtatggtacttgaaggttattcttcgtggttttgaaatgatatcggggttaaagtttcctcaccgccatttaaatttttggggattccggtgggggcgaatccaaggaaggtatggtcagtcatacaaattcaataaaagacctgcaaatttctctcgaacttctcagtggtggagggacttatgggctattgatggaccaaaagcggtgatacccgactggtttgggaccaatgtcattaaaaaatcaatggtcattgtggatcagatgtcggacatatggagatggaggtctagtagggatggaggtttttcagtggctgaggcatatacggttctgcgcacgcagcagacttcatcgatattaattgaggtggaggccaaagaattgagaccaatgtggaaggataaattaccatctaagctggctgggaattcaagaaccaattcgggatcgacacaacttttcctctcatcaatgcatgggtggttggaagcgaaagaagaagcgaggtatgttttccttctttgggtgttatga 3732 0.0 MKPKKMDEGWTEGRRRKDADRGRQSSREEGKGMRHITSVYFTHFPEEYMVKNMWEIFGRYANIHDVVIPNKRNRRGQRFGFARFREVEDVKMLVVKLDNIFIGKEKLWVNLPRRTVQQIAFNESLRKSYASVVRAPGGLKHKNERKEAGETEDVKMQMVFKAPVEEVIRLQRAYMGEVRNRGSAFRTQLFLMAHGIYSVRTTPMGANKVLLELEEGETLQEIMKGKQMWFDQWFAGIQKWEPRSVDTERRVKVNCYGIPLHVWGENFFYNLLAPFGDLLYVDEATLRKERVMEVEDVDESKQSRDNKTSYGSEMSSCQGEEDFDESVEAERRLAELKQEMFQKGNWKVSNEVDGRSAERGGPVFQQGGETVVNDTHGSNSGRRASEVPMKQIGVGVGYSRNATEQDGQERASVGANGGENEMGSEFQGTERAARGSIPDSFVMWDNDEATDTEQGKGQHIRSLNEYLGPSGNMGRAAIFQHQKRCPEKGKGKEGRMVNEWEVKEIWGSIGCDWRILPSTGLSGGCLTIWKKHMLEVVWEIQGRSFLGIGFRGKNATKVNCVVNVYAPCSLEGKRKVWDDLMMTKRGFLEVNWVLGGDFNAVVDRREFKGRSNYHSRTEMSDFKFFIQTMGLLDIPVVRKGVTWIAPNGESSSRLDRFLFSPDLMEEWGVIAQREPDFMELVKEFRTLEQSQGWRMYQLASKLKGLKMKIKKWKEENWGKDEKFLAEKVLELETMDQQLGQGVSGSVKSDAGWLEGVQNIRDYVLNHFTEFFTEEEEGKPKMDEVHFNQLNEHQREMLEEPFAAEEIKEVVWACEGGKSPGLDRFGFNFYKSCWEIIREDVVKAVQEFHQSGTLPRGATSSFLTLIPKVATPDRLAQYRPISLISSIQNIVSKLLPLRMKKVMGELISKCQSAFLPGRSILYGVLVANEIVDWAKRKRKPCFLFKVDFQKAYDLVNWNFLDYMLARMGFGRRWRKWMNSIVRNSHVSILVNGSPTDEFRPGRGLKQGYPLSPFLFLVVAEALSGLFRSAVEKGVFKELNIGDEAKFSILQYADDVIMMGEADLQSVWYLKVILRGFEMISGLKFPHRHLNFWGFRWGRIQGRYGQSYKFNKRPANFSRTSQWWRDLWAIDGPKAVIPDWFGTNVIKKSMVIVDQMSDIWRWRSSRDGGFSVAEAYTVLRTQQTSSILIEVEAKELRPMWKDKLPSKLAGNSRTNSGSTQLFLSSMHGWLEAKEEARYVFLLWVL 1243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g03208 1243 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 37 114 IPR000504 GO:0003723
Pste6g03208 1243 SMART rrm1_1 38 110 IPR000504 GO:0003723
Pste6g03208 1243 MobiDBLite consensus disorder prediction 400 431 - -
Pste6g03208 1243 ProSiteProfiles Reverse transcriptase (RT) catalytic domain profile. 846 1143 IPR000477 -
Pste6g03208 1243 MobiDBLite consensus disorder prediction 294 328 - -
Pste6g03208 1243 SUPERFAMILY RNA-binding domain, RBD 23 116 IPR035979 GO:0003676
Pste6g03208 1243 SUPERFAMILY DNA/RNA polymerases 789 1082 IPR043502 -
Pste6g03208 1243 Gene3D - 17 118 IPR012677 -
Pste6g03208 1243 MobiDBLite consensus disorder prediction 352 383 - -
Pste6g03208 1243 SUPERFAMILY DNase I-like 501 664 IPR036691 -
Pste6g03208 1243 Gene3D Endonuclease/exonuclease/phosphatase 494 677 IPR036691 -
Pste6g03208 1243 Pfam Domain of unknown function (DUF4283) 199 290 IPR025558 -
Pste6g03208 1243 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 866 1061 IPR000477 -
Pste6g03208 1243 Coils Coil 695 715 - -
Pste6g03208 1243 CDD RT_nLTR_like 860 1083 - -
Pste6g03208 1243 MobiDBLite consensus disorder prediction 1 30 - -
Pste6g03208 1243 PANTHER REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED 563 1084 - -
Pste6g03208 1243 MobiDBLite consensus disorder prediction 368 383 - -
Pste6g03208 1243 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 107 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g03208 Pste-Chr6 20432052 20438155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g03208 21 109 Eukaryotic Initiation Factors Gene Family AT1G71770 26.966 7.17e-06 48.5