Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g03192 atggactcttcttcctcatcaccgccaaacaactccctcgctttctctctttccaatcactttcccaacccttcttcctcccacccttcctctcccctttcccttttccactccttcacctatccatctctcactctcactggcaccaacacggtcgacgcctccgccacccgaggaactaacctctccatattccccaagttcgaggactttctaggcggtgccggcgccacctctgcaccgccacagcttccgcagttttccaccgataacagcaaccagctttacgattcggagctcaagacaacaatagccgcatgcttccctcgcggcttcgcagctcaaccgatcaccgaaccgcagaaaccctctcaaaagaaaaccgtcgacaccttcggccaacgcacctccatctaccgcggcgtcacccgacatagatggaccgggagatacgaagctcatctgtgggacaatagttgtaggagggaaggacaaagtaggaaaggaagacaaggtggctatgataaggaagataaggcagcaagagcttacgatctcgctgctctcaagtactggggtccaactacaaccacaaactttccgatttcaaactatgagaaggaactggaggacatgaaaaacatgactaggcaagagtttgttgcttctctacgaagacaccaccagcatggccgatggcaggctagaataggcagagttgccggaaacaaagacctctaccttggcactttcagcacccaagaagaagctgccgaggcctatgacattgctgccataaaattcagggggttaaatgcagtcacaaacttcgacatgagtcgctacgacgtgaaaagcattgcaaatagtactcttccaattggtggtttatctagcaagaataaaaactcggcagattctgcatctgagagcaaaagccacgaggcaagccgatcagaggaacatccttcatcagcttcatcggtgacctttggatcacaacagccaccttcaagctccaccttgagctttgccattcccattaagcaagacccttcagattactggtccattctggggtaccaaaaccccacccttgacaacagtggcgtcagaaacactgctagtgttgctacatcttttacatccaccaacaatggcactggtagtagtgtgacacccttccacatggagttttcaagtgtcccctcaagtaccggcagtgataacaatgcaccatttttcagtggaggaggcatccttgttcagcaacaaagtggtcatacacatggaagtggaagcagtggttcctcttctctaagctgttcaatcccattcgccacgcccatcttttctctaaatagcaatactagttacgagagcagtgctggttacggaaactggattggacctaccctgcacacattccaatcccatgcaaaaccaagtctctttcaaacgccaatatttggcatggaatga 1482 0.0 MDSSSSSPPNNSLAFSLSNHFPNPSSSHPSSPLSLFHSFTYPSLTLTGTNTVDASATRGTNLSIFPKFEDFLGGAGATSAPPQLPQFSTDNSNQLYDSELKTTIAACFPRGFAAQPITEPQKPSQKKTVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEDKAARAYDLAALKYWGPTTTTNFPISNYEKELEDMKNMTRQEFVASLRRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSIANSTLPIGGLSSKNKNSADSASESKSHEASRSEEHPSSASSVTFGSQQPPSSSTLSFAIPIKQDPSDYWSILGYQNPTLDNSGVRNTASVATSFTSTNNGTGSSVTPFHMEFSSVPSSTGSDNNAPFFSGGGILVQQQSGHTHGSGSSGSSSLSCSIPFATPIFSLNSNTSYESSAGYGNWIGPTLHTFQSHAKPSLFQTPIFGME 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g03192 493 MobiDBLite consensus disorder prediction 307 321 - -
Pste6g03192 493 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 94 357 - -
Pste6g03192 493 Pfam AP2 domain 138 193 IPR001471 GO:0003700|GO:0006355
Pste6g03192 493 Pfam AP2 domain 224 270 IPR001471 GO:0003700|GO:0006355
Pste6g03192 493 ProSiteProfiles AP2/ERF domain profile. 138 201 IPR001471 GO:0003700|GO:0006355
Pste6g03192 493 ProSiteProfiles AP2/ERF domain profile. 217 278 IPR001471 GO:0003700|GO:0006355
Pste6g03192 493 SMART rav1_2 225 284 IPR001471 GO:0003700|GO:0006355
Pste6g03192 493 SMART rav1_2 138 207 IPR001471 GO:0003700|GO:0006355
Pste6g03192 493 MobiDBLite consensus disorder prediction 293 344 - -
Pste6g03192 493 SUPERFAMILY DNA-binding domain 137 203 IPR016177 GO:0003677
Pste6g03192 493 MobiDBLite consensus disorder prediction 322 344 - -
Pste6g03192 493 FunFam AP2-like ethylene-responsive transcription factor ANT 137 203 - -
Pste6g03192 493 CDD AP2 137 203 IPR001471 GO:0003700|GO:0006355
Pste6g03192 493 Gene3D AP2/ERF domain 138 203 IPR036955 GO:0003700|GO:0006355
Pste6g03192 493 Gene3D AP2/ERF domain 223 280 IPR036955 GO:0003700|GO:0006355
Pste6g03192 493 PRINTS Ethylene responsive element binding protein signature 139 150 IPR001471 GO:0003700|GO:0006355
Pste6g03192 493 PRINTS Ethylene responsive element binding protein signature 260 280 IPR001471 GO:0003700|GO:0006355
Pste6g03192 493 CDD AP2 225 280 IPR001471 GO:0003700|GO:0006355
Pste6g03192 493 SUPERFAMILY DNA-binding domain 226 280 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g03192 Pste-Chr6 20223211 20226930 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g03192 94 493 AP2-EREBP Transcription Factor Family AT5G57390 51.357 2.81e-123 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Pste6g03192 AP2 5.9e-09 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g03192 6 20223211 20226930 Pste6g03192 6 20223211 20226930 ECH