Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g03188 atggccacagattcatcttttgaggaactagtcttgtctcctttgctgcttggaggtgttgcacttgatccttctaagtgcagtaaattgagtatggaggaaaaaagagaacttgtatatgaagtatctaagtggtcacacggtgcatctgagatgctgcagtcatggagccgtcaagagattttgcaaatattgtgtgcagagatggggaaagagagaaagtatactggactgacaaagttgaaaattatagaaaaccttctaaaaattgtgtctgaaaagaaatcagggggacaggaaacagcaacagaccctgaaccacaatcttctcctgcacctggtcagaaacctgctaaaaggcagagaaaatctgagaaccctcctaacatacctgttcctgcaactagtgtttcagtcaataatggtggtgatgctgttactactacatactgcaaaaattcagcttgcaaggctactctaaaccaagcggatgcattttgcaaaagatgttcatgctgcatttgccatcaatacgatgacaacaaagaccctagcttgtggttaatatgcagttcagagaatccgtttcctggtgtttcttgtggtttgtcatgccacctcgagtgtgctttaaagcatgatgggtctggtattggaaaagatggtgagcatcccaagcttgatggaagcttctactgtatctcctgtgggaaagtaaatgatttactcggatgctggagaaaacagctgatggtagcgaaggatactagacgcgtggatatactctgttatcgtgtctccttaagccaaagacttttacaaggaactgagttgtatgaagaacttcataaaattattgatgaagcagtgaagaaacttgaacctgaagtcggtccactgactggctcaccagtgaagattggaagggggattgtgaacaggctttcatctggacctgaggttcagaaattatgtggctttgctctggaatcccttgattcactgctttcaaaaaggatcttgcctgcctcacccaatccagcaattcaagatgtgcatttgctggctccaaatatggtgaggattgaagatgtcggtgccacatccctcactattattttgggttctgaagaaccgtctggtgaaaatatcactggttactccttgtggcatcgcaaatctaatgatgtggactatcccacgaacccgacttgcacctcgcttctaccaaatagaaggttcagtgtcagtggtctaattccaggtacagaatacagtttcaaagttgtttccaatgattcgagggagtctgttatgtgtgaagttcaagtctcgacagagcatggtgaggatgaagcccctaattgttcagcaacagaaagaagtcagagtccagtaaccaactgtagcagcctttccaatccatcatcagttgaagatgaaactaataactgtaatccatatagtgacctgactgataaccgagcagaccattatccttcttatcgcaaggatagtgaccagcttgcttctggaaatttatccaatgatgctattaactgttccaatctaagcagcatgggacttcctcctgatgcagattctttgtcagacaagcaacatgctggaggaataacggcctccatacctagttctgatgtgctaaagcttgaaaataagcattcaccggaggaacaagctgcagaagacgtgagcactgatgatgcattgaactccccagttccaacgggtagggaatgtgtgccattagtaggtagctcagaaggaggtttgcctaatactccctgcaagttggaaacacttaaagatggacctggaaggaatggaagatctaagtccagtggcaaagatcaagaaaatggatccgggaaaagggagcgcccccaagatggaagcacatccaagaagagaagtggagaaaggcaagatgagggtcgtgccacaaagggcttttcagatcaggattttgagtattatgtgaaggtgattaggtggttagagtgtgaaggacacatagaaaagaacttcaggcagaagtttctgacttggtacagcttaagagccacctctcaggaagtaaggatagtgaaaatatacattgatacatttcttgaagatccagcttctcttgcagagcaacttgtggacaccttctcagaatgtccagttactagctccaagcttgaagcctctcctgacttgccatgcactccggttgctggggctggctttgtaggcttgaagtccaactcatcaaacctttgccccagtacaggttccatagggtggaaaaggaagattgtttccaatggttctaaaacttactgcatgaagacatggaatcccataaacaacaagaagtttgaaacattgtcctacctgccacccctatccgatgaatcaattgcaaaggagataaactacatgctcaagaagggatggatcccttgccttgaatttgatgagttggggtgtgttcatagagaaaacagccgcatgccagggtactatgatgggaggtattggacattgtggaagctaccaatgtttggttgcacagagtcttctcaagtcctgaacgagatccatgaatgcagaaaggcatatccaaatgcatatatccgctgcttagcatttgacagcaagcgccacatgcagtccatggctttcatcattcacaaaccagctgccacttga 2718 0.0 MATDSSFEELVLSPLLLGGVALDPSKCSKLSMEEKRELVYEVSKWSHGASEMLQSWSRQEILQILCAEMGKERKYTGLTKLKIIENLLKIVSEKKSGGQETATDPEPQSSPAPGQKPAKRQRKSENPPNIPVPATSVSVNNGGDAVTTTYCKNSACKATLNQADAFCKRCSCCICHQYDDNKDPSLWLICSSENPFPGVSCGLSCHLECALKHDGSGIGKDGEHPKLDGSFYCISCGKVNDLLGCWRKQLMVAKDTRRVDILCYRVSLSQRLLQGTELYEELHKIIDEAVKKLEPEVGPLTGSPVKIGRGIVNRLSSGPEVQKLCGFALESLDSLLSKRILPASPNPAIQDVHLLAPNMVRIEDVGATSLTIILGSEEPSGENITGYSLWHRKSNDVDYPTNPTCTSLLPNRRFSVSGLIPGTEYSFKVVSNDSRESVMCEVQVSTEHGEDEAPNCSATERSQSPVTNCSSLSNPSSVEDETNNCNPYSDLTDNRADHYPSYRKDSDQLASGNLSNDAINCSNLSSMGLPPDADSLSDKQHAGGITASIPSSDVLKLENKHSPEEQAAEDVSTDDALNSPVPTGRECVPLVGSSEGGLPNTPCKLETLKDGPGRNGRSKSSGKDQENGSGKRERPQDGSTSKKRSGERQDEGRATKGFSDQDFEYYVKVIRWLECEGHIEKNFRQKFLTWYSLRATSQEVRIVKIYIDTFLEDPASLAEQLVDTFSECPVTSSKLEASPDLPCTPVAGAGFVGLKSNSSNLCPSTGSIGWKRKIVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDESIAKEINYMLKKGWIPCLEFDELGCVHRENSRMPGYYDGRYWTLWKLPMFGCTESSQVLNEIHECRKAYPNAYIRCLAFDSKRHMQSMAFIIHKPAAT 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g03188 905 Gene3D Ribulose bisphosphate carboxylase, small subunit 784 905 IPR036385 -
Pste6g03188 905 SMART RuBisCO_small_2_a 794 902 IPR000894 -
Pste6g03188 905 Gene3D Immunoglobulins 352 450 IPR013783 -
Pste6g03188 905 PRINTS RuBisCO small subunit signature 842 871 IPR024681 -
Pste6g03188 905 PRINTS RuBisCO small subunit signature 793 819 IPR024681 -
Pste6g03188 905 PRINTS RuBisCO small subunit signature 876 902 IPR024681 -
Pste6g03188 905 PRINTS RuBisCO small subunit signature 772 790 IPR024681 -
Pste6g03188 905 PRINTS RuBisCO small subunit signature 821 836 IPR024681 -
Pste6g03188 905 Pfam PHD - plant homeodomain finger protein 151 270 IPR032881 -
Pste6g03188 905 PANTHER VIN3-LIKE PROTEIN 2-RELATED 20 787 IPR044514 GO:0010048|GO:0040029
Pste6g03188 905 CDD PHD_VIN3_plant 171 236 - -
Pste6g03188 905 SUPERFAMILY RuBisCO, small subunit 784 903 IPR036385 -
Pste6g03188 905 CDD FN3 356 437 IPR003961 GO:0005515
Pste6g03188 905 Pfam Fibronectin type III domain 356 431 IPR003961 GO:0005515
Pste6g03188 905 SUPERFAMILY Fibronectin type III 356 431 IPR036116 GO:0005515
Pste6g03188 905 MobiDBLite consensus disorder prediction 610 656 - -
Pste6g03188 905 FunFam Ribulose bisphosphate carboxylase small chain, chloroplastic 784 905 - -
Pste6g03188 905 CDD RuBisCO_small 793 902 IPR000894 -
Pste6g03188 905 SMART FN3_2 354 437 IPR003961 GO:0005515
Pste6g03188 905 Pfam Ribulose bisphosphate carboxylase, small chain 795 902 IPR000894 -
Pste6g03188 905 ProSiteProfiles Fibronectin type-III domain profile. 356 451 IPR003961 GO:0005515
Pste6g03188 905 MobiDBLite consensus disorder prediction 541 555 - -
Pste6g03188 905 MobiDBLite consensus disorder prediction 450 491 - -
Pste6g03188 905 MobiDBLite consensus disorder prediction 444 511 - -
Pste6g03188 905 Hamap Ribulose bisphosphate carboxylase small subunit [cbbS]. 793 903 IPR000894 -
Pste6g03188 905 MobiDBLite consensus disorder prediction 523 656 - -
Pste6g03188 905 MobiDBLite consensus disorder prediction 95 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g03188 Pste-Chr6 20154811 20163450 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g03188 17 484 PHD Gene Family AT4G30200 55.711 4.49e-164 491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g03188 6 20154811 20163450 Pste6g03188 6 20154811 20163450 ECH