Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g03177 atgtggaatcctctgtcatgggtaatggaagctgctgctattatggcaattgctcttgcaaatggagatggaaagcccccagattggcaagattttgtgggtattgtttgcttgttggtgatcaactccaccatcagttttattgaagaaaacaatgctggtaatgcagcagctgctcttatggctggccttgctcccaagacaaaggttcttagagatggtaaatggactgagcaagaagcttctattttagttcccggagatatcataagcatcaaactaggagatatcattcctgctgatgctcgtcttcttgagggtgatcctttgaaggttgatcaatctgcattgactggagagtcacttcctgtaactaggagtcctggagatgaagttttctctggctcaacttgtaaacaaggtgaaattgaagctgttgtcattgcaactggtgtccacacatttttcgggaaagcagctcacctggttgatagtaccaaccaagttggacatttccagaaagtgcttacagcaattggaaacttctgtatttgttccattgcagttggtatgttggctgagattatagtcatgtacccgattcagcaccgcaagtacagagatggaattgacaaccttttggtcctcttgattggaggaattcccattgctatgccaactgtgctgtctgtgacaatggccattgggtctcacaggctctctcagcaaggtgctatcaccaaaagaatgactgccattgaagaaatggctggtatggatgtcctttgcagtgacaagacaggtacactcacacttaacaagctgagtgttgacaagaacttgattgaggtcttcgcaaagggtgtggaaaaggaccatgtgattcttcttgcagcaagggcttcaaggactgaaaaccaggatgcaatagatgctgccattgttggaatgcttgctgatcctaaagaggcaagggctgggataagagaggtacacttcttaccatttaatcctgttgacaagagaacggctttgacttacattgattctgatggaaattggcaccgggcaagcaaaggtgctcctgaacagatcatgatcctgtgtaacctcagggaagatgcaaagaagaaggtccatgctattattgacaagtttgcagacagaggacttcgttcacttgcagttgctagacaggaagtccctgagaaaacaaaagagagtgacggtgggccatggcaatttgttggtttgttgtcactgtttgaccccccaagacatgacagtgctgaaactatccgtagagctctccatcttggtgtaaatgtcaagatgattactggtgatcaacttgccattgctaaagaaactggccgaagacttgggatgggaactaatatgtatccatctgcttccttgcttggtcaagacaaagatgcaagtattgcagctcttccagtagaagagctgattgagaaggcagacggttttgctggagtctttccagagcacaaatatgaaattgtgaagaagttgcaagagaggaagcacatctgtggaatgactggagacggtgtcaatgatgctcctgctttgaagaaggctgatatcggaattgcagttgctgatgcaactgatgctgcaagaagtgcttctgatattgtcttgacagaacctggtttgagtgtaattatcagtgcagtcttaactagcagggccattttccagagaatgaaaaactacacgatatatgcagtatctatcactatccgtatagtgtttggcttcatgttcattgctttgatctggaaattcgacttctctcccttcatggttttgatcattgccattctgaatgatggaacaatcatgacaatttccaaggacagggtgaagccatctcccttgcctgatagctggaaactgcaagaaatatttgctactgggattgtacttggaagttacttggcacttatgactatcatattcttctgggcaatgaaagaaactcatttcttccctgacaaatttggagttagacacctcactcatgatgaaatgatgtctgctttgtatttacaagtcagtatagtcagtcaggctctgatatttgttacccgttctcgaagctggtcctttgttgatcgccctggaatgctgttggttattgcttttatcattgctcagctgattgctacaatcatagcagtatatgccaactggggctttgcaaaggtcaaaggaattggttggggttgggcaggagtcatctggctctacagtattgtcttctacgtcccccttgacctgatgaagtttgccatccgttacatattgagtggcaaggcttggctgaacctgcttgaaaacaagactgccttcaccaccaagaaagactatggcaaagaggagagggaagctcagtgggctcatgctcagaggacactgcatggacttcaaccaccagaaacttccggcattttcaatgagaagaacagttatagagagctctctgagattgccgagcaggccaagagaagagctgaagttgctaggcttcgtgagcttcatacactcaagggacatgttgagtctgtggtgaagctgaaggggttggacatcgatacgattcagcagcactacactgtgtga 2652 0.0 MWNPLSWVMEAAAIMAIALANGDGKPPDWQDFVGIVCLLVINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWTEQEASILVPGDIISIKLGDIIPADARLLEGDPLKVDQSALTGESLPVTRSPGDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGMLAEIIVMYPIQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEVFAKGVEKDHVILLAARASRTENQDAIDAAIVGMLADPKEARAGIREVHFLPFNPVDKRTALTYIDSDGNWHRASKGAPEQIMILCNLREDAKKKVHAIIDKFADRGLRSLAVARQEVPEKTKESDGGPWQFVGLLSLFDPPRHDSAETIRRALHLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSASLLGQDKDASIAALPVEELIEKADGFAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMFIALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLQEIFATGIVLGSYLALMTIIFFWAMKETHFFPDKFGVRHLTHDEMMSALYLQVSIVSQALIFVTRSRSWSFVDRPGMLLVIAFIIAQLIATIIAVYANWGFAKVKGIGWGWAGVIWLYSIVFYVPLDLMKFAIRYILSGKAWLNLLENKTAFTTKKDYGKEEREAQWAHAQRTLHGLQPPETSGIFNEKNSYRELSEIAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIDTIQQHYTV 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g03177 883 NCBIfam plasma-membrane proton-efflux P-type ATPase 1 738 IPR006534 GO:0008553|GO:0016020|GO:0120029
Pste6g03177 883 CDD P-type_ATPase_H 1 773 IPR006534 GO:0008553|GO:0016020|GO:0120029
Pste6g03177 883 FunFam Plasma membrane ATPase 275 422 - -
Pste6g03177 883 PRINTS H+-transporting ATPase (proton pump) signature 494 510 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pste6g03177 883 PRINTS H+-transporting ATPase (proton pump) signature 692 713 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pste6g03177 883 PRINTS H+-transporting ATPase (proton pump) signature 553 578 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pste6g03177 883 PRINTS H+-transporting ATPase (proton pump) signature 379 397 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pste6g03177 883 PRINTS H+-transporting ATPase (proton pump) signature 522 538 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pste6g03177 883 FunFam Plasma membrane ATPase 66 150 - -
Pste6g03177 883 Gene3D - 260 559 IPR023214 -
Pste6g03177 883 SUPERFAMILY Calcium ATPase, transmembrane domain M 1 779 IPR023298 -
Pste6g03177 883 Pfam haloacid dehalogenase-like hydrolase 259 536 - -
Pste6g03177 883 SUPERFAMILY Calcium ATPase, transduction domain A 66 163 IPR008250 -
Pste6g03177 883 NCBIfam HAD-IC family P-type ATPase 35 283 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pste6g03177 883 NCBIfam HAD-IC family P-type ATPase 497 611 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pste6g03177 883 SFLD p-type atpase 245 573 IPR044492 -
Pste6g03177 883 Gene3D - 832 883 - -
Pste6g03177 883 PANTHER CALCIUM-TRANSPORTING ATPASE 1 815 - -
Pste6g03177 883 ProSitePatterns E1-E2 ATPases phosphorylation site. 265 271 IPR018303 -
Pste6g03177 883 FunFam ATPase 4 plasma membrane-type 507 747 - -
Pste6g03177 883 PRINTS P-type cation-transporting ATPase superfamily signature 263 277 - -
Pste6g03177 883 PRINTS P-type cation-transporting ATPase superfamily signature 113 127 - -
Pste6g03177 883 PRINTS P-type cation-transporting ATPase superfamily signature 417 428 - -
Pste6g03177 883 PRINTS P-type cation-transporting ATPase superfamily signature 522 541 - -
Pste6g03177 883 PRINTS P-type cation-transporting ATPase superfamily signature 545 557 - -
Pste6g03177 883 PRINTS P-type cation-transporting ATPase superfamily signature 439 449 - -
Pste6g03177 883 Gene3D - 28 747 - -
Pste6g03177 883 Pfam E1-E2 ATPase 65 242 - -
Pste6g03177 883 Gene3D - 275 422 IPR023299 GO:0000166
Pste6g03177 883 SFLD Haloacid Dehalogenase 245 573 - -
Pste6g03177 883 Coils Coil 834 854 - -
Pste6g03177 883 FunFam Plasma membrane ATPase 414 570 - -
Pste6g03177 883 Gene3D - 66 150 - -
Pste6g03177 883 SUPERFAMILY HAD-like 259 569 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g03177 Pste-Chr6 20016008 20023801 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g03177 1 883 Primary Pumps ATPases AT2G18960 87.684 0.0 1549
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g03177 6 20016008 20023801 Pste2g03345 2 33504695 33513897 PCT