Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g03154 atgtcagacgacgatgaagatgaccaggcagagagcaataccaacctatacgaaggaagcctcgatggagctgaaactcttggctttggtcctcttgtccccaccgagagtgaaagatctttgatggagcgagtcaggcatgaattgaagcatgaactaaaacagggttataaggagaagattgtggacataagagaagaaattctacgaaagaggcgagccgggaagcttccaggggacaccacatctcttttgaaagcttggtggcaagcacattctaaatggccttaccccactgaggatgacaaggctagattggtgcaggaaacagggttgcaattgaagcagataaataattggttcataaatcaaaggaaaaggaattggcatactaataacccctcatcctctagtaacaccaaaagcaagcgcaagaggtag 441 0.0 MSDDDEDDQAESNTNLYEGSLDGAETLGFGPLVPTESERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWQAHSKWPYPTEDDKARLVQETGLQLKQINNWFINQRKRNWHTNNPSSSSNTKSKRKR 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g03154 146 Pfam ELK domain 48 69 IPR005539 GO:0003677
Pste6g03154 146 Gene3D - 69 131 - -
Pste6g03154 146 SMART HOX_1 70 135 IPR001356 GO:0003677
Pste6g03154 146 MobiDBLite consensus disorder prediction 125 139 - -
Pste6g03154 146 ProSiteProfiles 'Homeobox' domain profile. 68 131 IPR001356 GO:0003677
Pste6g03154 146 MobiDBLite consensus disorder prediction 125 146 - -
Pste6g03154 146 ProSiteProfiles ELK domain profile. 48 68 IPR005539 GO:0003677
Pste6g03154 146 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 33 138 - -
Pste6g03154 146 FunFam homeobox protein knotted-1-like 3 isoform X1 69 130 - -
Pste6g03154 146 Pfam Homeobox KN domain 88 127 IPR008422 GO:0003677|GO:0006355
Pste6g03154 146 SUPERFAMILY Homeodomain-like 70 135 IPR009057 -
Pste6g03154 146 MobiDBLite consensus disorder prediction 1 33 - -
Pste6g03154 146 CDD homeodomain 71 132 IPR001356 GO:0003677
Pste6g03154 146 SMART ELK_2 48 69 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g03154 Pste-Chr6 19788560 19793318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g03154 4 146 Homeobox Transcription Factor Family AT5G25220 83.916 6.46e-84 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Pste6g03154 Homeobox_KN 4.1e-18 CL0123