Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g03138 atgtgtgtgcaagacggtgaacaagtcgatgaagatatagagaagaacgttgatgacagaaggatgtcttggcctttgcattgtgacctcttgcatgcccacatggataatcgagaaaaagactcttcttttagaactccctctgaccagatcagtgttgcaaattcatttcctctggaaagcatatgtgaggatgcagaaattgtggataaaaaacagaacctgaactttgtccctactcttcggtctggagagtggtctgatattggagaacgctcttccatggaggatgctcatatatccattggagacttggcagaaaaatttggcagatatgtactttgcgaggaagctatttccttttatggtgtatttgatggacatggagggaagagtgctgcacagtttgttcgtgatcgtctgccacgggtgattgttgaggatgctgactttcctttggaacttgagaaggttgtcacaaggtcatttttggagattgatgcagagtttgcgagatcatgttctatcgagtcttccctgtcttctggtacaactgcactgactgcaattatatttggaaggtctttacttgtagccaatgctggagattgccgtgcagtattgtcccgtggtggagtggctatagaaatgtcaaaagatcacaggccattatgcattaaagaaaggatgaggattgagtctctaggtggatacatagatgatggttacctaaacggccagttaggtgtgactcgtgctctaggtgattggcatcttgcaggaatgaaggaaatgaatggaaagggtggtccattgagtgctgagccggaacttaaattgatgacattgacaaaagaagatgaattcttgataattggcagtgatggactctgggatgttttccgcagccaaaatgctgtagattttgctcgaaggaggcttcaagggcacaatgatgtgaagcagtgttgcaaggaaataatagcggaagcaataaagagaggtgcaacagacaacttgacagtggtgattatatgttttcactcaaaacctccaccttctgtggtcgtagaaaggcctagagtcagaagaagcatatctgctgagggacttcaaaatctcaagtgcttgctagaaggatag 1143 0.0 MCVQDGEQVDEDIEKNVDDRRMSWPLHCDLLHAHMDNREKDSSFRTPSDQISVANSFPLESICEDAEIVDKKQNLNFVPTLRSGEWSDIGERSSMEDAHISIGDLAEKFGRYVLCEEAISFYGVFDGHGGKSAAQFVRDRLPRVIVEDADFPLELEKVVTRSFLEIDAEFARSCSIESSLSSGTTALTAIIFGRSLLVANAGDCRAVLSRGGVAIEMSKDHRPLCIKERMRIESLGGYIDDGYLNGQLGVTRALGDWHLAGMKEMNGKGGPLSAEPELKLMTLTKEDEFLIIGSDGLWDVFRSQNAVDFARRRLQGHNDVKQCCKEIIAEAIKRGATDNLTVVIICFHSKPPPSVVVERPRVRRSISAEGLQNLKCLLEG 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g03138 380 CDD PP2Cc 82 347 IPR001932 -
Pste6g03138 380 Gene3D - 64 351 IPR036457 -
Pste6g03138 380 SUPERFAMILY PP2C-like 69 349 IPR036457 -
Pste6g03138 380 Pfam Protein phosphatase 2C 91 339 IPR001932 -
Pste6g03138 380 ProSitePatterns PPM-type phosphatase domain signature. 121 129 IPR000222 GO:0043169
Pste6g03138 380 ProSiteProfiles PPM-type phosphatase domain profile. 82 347 IPR001932 -
Pste6g03138 380 PANTHER PROTEIN PHOSPHATASE 2C 70 345 IPR015655 GO:0004722|GO:0006470
Pste6g03138 380 FunFam Probable protein phosphatase 2C 22 66 350 - -
Pste6g03138 380 SMART PP2C_4 72 345 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g03138 Pste-Chr6 19672943 19676114 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g03138 45 380 PP2C-type Phosphatase Gene Family AT2G25620 57.059 7.03e-133 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Pste6g03138 PP2C 1.7e-66 CL0238
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g03138 6 19672943 19676114 Pste6g03138 6 19672943 19676114 ECH
Pste6g03138 6 19672943 19676114 Pste2g00965 2 10234975 10238485 PCT