Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g03113 atggggaggaaaaagaagcaagtaggagaaataagggagaatggtaaagggggagacagcagccccacagcatttgataaggatactatggtgtttatatccatgtctcaagagttaaagaatgaggggaacaagctgttccaaaagagggatcttgaaggagctatactaaaatatgagaaagctctcaagttgcttccaagaaatcatgttgatgtttcctatctgcggagcaacatggctgcatgttacatgcagatgggactcagtgagttccctagggcaattcatgaatgtgatttggctcttgaagtgacaccgaaatatagtaaagctctgctgaagagggcaaggtgctatgagactttaaataggttggatttagctctaagagatgccagtactgttgtgaagatggagccaaataattccatggcattggagatcttggaaaaggtgaaaaaagcacttgaggagaaaggattgaaagtaaatgatacaataattgagttgcctccagattatgttgagcctcctaatgctttgcctccagaaaaggtattgaaagagaagatgcgcaagaagaagagcaataaagtggaagagaaggctcttgatgacaaaattctagaaaagcaaaccgaggagaaatttgagaaggctgagggtggtgttgtagttgtagagaagaagattaacatgtccaagaagaagaagaccaaggaaaaaattgatgagaagaaggctgacattaaggaagttataaaggaaaaaagtaatggtagaagggatgaagtgcctaagaaaacagccaaacttatttttggtgatgatataaggtgtgctgaactgcctattaattgtagcctcttccagttaagagaagttattcaggaccgattcccaagcttaggagctgttcttgtcaaatacagggacctagaaggtgatttggttacaatcacttctgatgatgaattaagatgggctgaaacaggatgcagtggttctattcgactgtacatagtagaagctactcctgagcaggatccactttttgagaaatttaaagtgaaggaggcggaagaggctggcattaacactgcacctgagaatggtagtgtgggaaaaccaaaggaaattgttagttcttcttgcattgaggattggataattcattttgccaaactattcaagaaccatgttgggtttgaatctgacacatatttggattttcatgaacttgggatgaagctctattcagaggccttggaagaaacagttacaagtgaagaagcacaaggcctatttgacatggcacgagataagtttgaagagatgactgctcttgcattgttcaactggggaaatgtgcatatgtctacggcaaggaagaaagtatatttcatagaagatttttctaaagagcatctatgtgaacaaatcaaaagttcatatgaatgggcactggaagaatacgcaaaagcaggagaaaaatatgaagcagccattaaaattaagttagattttcatgagggatacctggcactagggctacagctgtttgagcaagcaaaactttcttggtgtcatgcgctcagtagtaatgtagatttactgacatggccttccaccgaggttcttcatctttacaacaatgctgaggaaaatatggagaaaggaatgcagatttgggaagaatcagaaaaacagaacttgagtaaaacatctaattcaaatgatgttagattgcatttgcagagcatggggttggatgggctatttaataatgtatcctctgatgaacttgcagcacagaaggcacatatgaggtctcaaataaatctcctatggggcaccatgctatatgaacgctcaattgtagaattcaaattagagctaccaatatggcatgaatctctagaagtagcaattgagaagtttgaacttgctggagcttcttcaactgatatagctgtaattttgaataaccacagttcaaataaaactgcagtagatggtcttactttcgaaattaatgaaatagtacaggcatgggatgagatgtacaaagctaaaaagtggcaaggtggagttccatcatttcgtttggaacacttatttagaaggcgagtttcaaaaacttatcatgcctttgagcttgcatga 2169 0.0 MGRKKKQVGEIRENGKGGDSSPTAFDKDTMVFISMSQELKNEGNKLFQKRDLEGAILKYEKALKLLPRNHVDVSYLRSNMAACYMQMGLSEFPRAIHECDLALEVTPKYSKALLKRARCYETLNRLDLALRDASTVVKMEPNNSMALEILEKVKKALEEKGLKVNDTIIELPPDYVEPPNALPPEKVLKEKMRKKKSNKVEEKALDDKILEKQTEEKFEKAEGGVVVVEKKINMSKKKKTKEKIDEKKADIKEVIKEKSNGRRDEVPKKTAKLIFGDDIRCAELPINCSLFQLREVIQDRFPSLGAVLVKYRDLEGDLVTITSDDELRWAETGCSGSIRLYIVEATPEQDPLFEKFKVKEAEEAGINTAPENGSVGKPKEIVSSSCIEDWIIHFAKLFKNHVGFESDTYLDFHELGMKLYSEALEETVTSEEAQGLFDMARDKFEEMTALALFNWGNVHMSTARKKVYFIEDFSKEHLCEQIKSSYEWALEEYAKAGEKYEAAIKIKLDFHEGYLALGLQLFEQAKLSWCHALSSNVDLLTWPSTEVLHLYNNAEENMEKGMQIWEESEKQNLSKTSNSNDVRLHLQSMGLDGLFNNVSSDELAAQKAHMRSQINLLWGTMLYERSIVEFKLELPIWHESLEVAIEKFELAGASSTDIAVILNNHSSNKTAVDGLTFEINEIVQAWDEMYKAKKWQGGVPSFRLEHLFRRRVSKTYHAFELA 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g03113 722 PANTHER PROTEIN CLMP1 13 720 IPR044517 -
Pste6g03113 722 SMART PB1_new 268 345 IPR000270 GO:0005515
Pste6g03113 722 CDD PB1 272 342 - -
Pste6g03113 722 Gene3D - 259 345 - -
Pste6g03113 722 MobiDBLite consensus disorder prediction 1 24 - -
Pste6g03113 722 SUPERFAMILY CAD & PB1 domains 270 353 - -
Pste6g03113 722 SMART tpr_5 36 69 IPR019734 GO:0005515
Pste6g03113 722 SMART tpr_5 110 143 IPR019734 GO:0005515
Pste6g03113 722 SMART tpr_5 74 109 IPR019734 GO:0005515
Pste6g03113 722 Gene3D Tetratricopeptide repeat domain 34 164 IPR011990 GO:0005515
Pste6g03113 722 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Pste6g03113 722 Pfam PB1 domain 270 344 IPR000270 GO:0005515
Pste6g03113 722 ProSiteProfiles PB1 domain profile. 268 345 IPR000270 GO:0005515
Pste6g03113 722 ProSiteProfiles TPR repeat profile. 110 143 IPR019734 GO:0005515
Pste6g03113 722 SUPERFAMILY TPR-like 35 158 IPR011990 GO:0005515
Pste6g03113 722 Coils Coil 237 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g03113 Pste-Chr6 19353573 19357164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g03113 19 143 Calmodulin-binding Proteins AT3G25230 29.496 1.54e-06 49.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g03113 6 19353573 19357164 Pste6g03113 6 19353573 19357164 ECH
Pste6g03113 6 19353573 19357164 Pste2g01007 2 10708300 10712738 PCT