Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g03062 atgtccaccagaaatggagattccgaaactctccttcgtcaaccttttttgtcttcccaaagatccgttgtgaattcgacgtcccaggttgccatcgttggcgccaatgtctgcccaattgagagcctcgactacgagattttcgagaacgagttcttcaagcaggattggaggagcagagggaaggctcagatatttcagtacatttttatgaagtggctcttgtgctttcttattggcatgatcgttagccttgttggcttttgcaacaatctcgccgttgagaatctcgctggcatcaagtttgtcgtcacctccaatatgatgttggagaggaggtttctgttggcctttttcatattttttttttcaaatttgggtctcacgctttttgcctccttaatcacggctttgatcgcacctactgccaccggttcaggtatacctgaggtgaaggcttacctaaatggcgttgatgcgcccggaatatttactgtaccgactctgtttgttaagatcattggaagcattacggcggtgtcatcatcgcttcttattgggaaggcagggcctatggtgcatactggtgcatgtgtggcagcattggtaggtcagggtggatcgaagagatataggttaacatggaaatggttacagttttttaagaatgaccgagatcgaagagatctgataacatgtggatcggcggctggaattgctgctgccttccgtgcccctgttggtggtgtgttgtttgctcttgaagagatggcatcttgtctaccatggctagcaaacatgttaaaaccaaactcctctgaagccatggcatgttttttaactgatgaggcctttaaccacttatctgcttctgttgacctcactgcagggccatcattctacaggtggagaagtgctcttctgtggagagctttctttacagcggcaatagttgcaattttgcttcgtgccatgattgatttatgtttaagtggggggatacttggcagcttatttaatttgatgttgagcaaagttcttcgaatatacaattatatcaacgagaaaggaaccattttcaaaattttgcttgcttgtttaatctccatctgtacctcctgccttctttttggtttgccgtggtttacatcttgccgaccttgtccaccggatccaactgagccttgtcctacaataggtcgatctggtatatacaagaaattccagtgtgatcctaatgaatacaatgatcttgccagcctcattttcaacacaaatgatgatgctattagaaatttatttagcaaaaatactgacgacgagtttcagttaagatcaatgttcatctttttcatcacgtgcttttttttaagtatctttagctatggagttgttgctcctgcgggtctttttgtgccagttattgtgactggtgcatcttatggacgggttgttggaatgttggtcagaaaaaactcgaatcttagccatggtctttatgctgtgcttggtgctgcttcctttcttggcggatccatgaggacgacagtttctttgtgtgtaattattctagaactgacaaataacctgttattgctacccctaatcatgatggtgctgctcatatcaaagacagtagcagatgctttcaacgcaaatatatatgacattataatgaaggccaagggtttgccttatttagaaactcatgctgaaccatatatgagacagctaacagtaggtgatgtagtcacaggtccacttcagacatttaatggcattgagaaggtccgtaacattgtgtttattctaaagagtacggggcataatgggtttcctgttattgatgagcctcctatttcggaagcttcggttttattcggcataatccttcgtgaccaccttctcacgttgttgaagaagaaagcttttctgtcctcaccagcaacaggttgtgatgtcttcaataagttttcagctgacgatttcgcaaaaaagggttcaagcaaacgtctaaagatagaggagatacagctatcagaggaagagatggacatgttcatagatctacatccatttactaatacttctccttatactgtcgtggagactatgtcactggcaaaggctgttacactttttagagagcttggtttgagacatctgctagtgatacccaagatctctggtagatcacctgtggttggaatactcacacggcacgatttcatgccagaacatatattaggtttgcatccttttcttgcaagaaacaccggaagattaagattttttagcagccttgtctga 2310 0.0 MSTRNGDSETLLRQPFLSSQRSVVNSTSQVAIVGANVCPIESLDYEIFENEFFKQDWRSRGKAQIFQYIFMKWLLCFLIGMIVSLVGFCNNLAVENLAGIKFVVTSNMMLERRFLLAFFIFFFSNLGLTLFASLITALIAPTATGSGIPEVKAYLNGVDAPGIFTVPTLFVKIIGSITAVSSSLLIGKAGPMVHTGACVAALVGQGGSKRYRLTWKWLQFFKNDRDRRDLITCGSAAGIAAAFRAPVGGVLFALEEMASCLPWLANMLKPNSSEAMACFLTDEAFNHLSASVDLTAGPSFYRWRSALLWRAFFTAAIVAILLRAMIDLCLSGGILGSLFNLMLSKVLRIYNYINEKGTIFKILLACLISICTSCLLFGLPWFTSCRPCPPDPTEPCPTIGRSGIYKKFQCDPNEYNDLASLIFNTNDDAIRNLFSKNTDDEFQLRSMFIFFITCFFLSIFSYGVVAPAGLFVPVIVTGASYGRVVGMLVRKNSNLSHGLYAVLGAASFLGGSMRTTVSLCVIILELTNNLLLLPLIMMVLLISKTVADAFNANIYDIIMKAKGLPYLETHAEPYMRQLTVGDVVTGPLQTFNGIEKVRNIVFILKSTGHNGFPVIDEPPISEASVLFGIILRDHLLTLLKKKAFLSSPATGCDVFNKFSADDFAKKGSSKRLKIEEIQLSEEEMDMFIDLHPFTNTSPYTVVETMSLAKAVTLFRELGLRHLLVIPKISGRSPVVGILTRHDFMPEHILGLHPFLARNTGRLRFFSSLV 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g03062 769 PRINTS Plant CLC chloride channel signature 418 434 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pste6g03062 769 PRINTS Plant CLC chloride channel signature 46 54 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pste6g03062 769 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 330 750 - -
Pste6g03062 769 CDD CBS_pair_voltage-gated_CLC_euk_bac 570 746 - -
Pste6g03062 769 Gene3D Clc chloride channel 64 567 - -
Pste6g03062 769 Gene3D - 568 745 IPR046342 -
Pste6g03062 769 SMART cbs_1 697 748 IPR000644 -
Pste6g03062 769 SMART cbs_1 587 640 IPR000644 -
Pste6g03062 769 SUPERFAMILY CBS-domain pair 570 744 IPR046342 -
Pste6g03062 769 Pfam CBS domain 695 743 IPR000644 -
Pste6g03062 769 Pfam Voltage gated chloride channel 129 548 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pste6g03062 769 PRINTS Chloride channel signature 172 191 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pste6g03062 769 PRINTS Chloride channel signature 466 486 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pste6g03062 769 PRINTS Chloride channel signature 516 535 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pste6g03062 769 PRINTS Chloride channel signature 554 568 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pste6g03062 769 PRINTS Chloride channel signature 236 255 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pste6g03062 769 PRINTS Chloride channel signature 141 158 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pste6g03062 769 PRINTS Chloride channel signature 498 514 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pste6g03062 769 ProSiteProfiles CBS domain profile. 694 754 IPR000644 -
Pste6g03062 769 SUPERFAMILY Clc chloride channel 50 569 IPR014743 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g03062 Pste-Chr6 18848201 18855120 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g03062 5 766 Ion Channels AT5G33280 66.501 0.0 1047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g03062 6 18848201 18855120 Pste6g03062 6 18848201 18855120 ECH