Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g03061 atggattgggtggcacattcatattctagtcatggtcaggaactgttctacataaacggcaatgtagtgaacaaggttgctttctgtgaggctctccaactgtgtattgcaaaggggtgtgacgtgaaggactgctttggaagtgtcaaatgtgggatgtcgtttggtatggtctcatatattgtattgaatttaccttcaaaggcagcgaggaaacttttcaaggaggattcgagcagtgaatccacatcaaaaggagattataaacatccgtcaaccaatgtagttgttatttttccagggggagctttgttggtatgttgtattgctctttgtccttgtttctttgccaagagacggaaagcaacttctcatactgttttggtcaaggaacaaatttcaatggattcagttgcctcctttgatgcttccgttaatgataagattccggccagtccaattcgggtgccacctagttcttcaagattctcaatgtctccaaaaattactagatttcaatcattgcatctcaatctgaaccaagttacaaaagctacccaaaacttttcagaaacgttacagataggagaaggaggttttggaactgtctacaaggccaagttggaagatggcgtggttgtggctgtaaaacgtgcaaaaaaggaacattttgatagtttgaaaacagaattcagcagtgaaattgaacttttggccaaaattgatcatcgaaacctggtgaagcttctaggttatattgaaaaaggaaatgaacgacttcttattacagagtatgtggcaaatggtacacttagagaacatttggatggcatgcgtggaaaaatactagacttcaatcaacgtcttgaaattgcaattgatgtagctcatggtttgacctatctacatctatatgcagaaaagcaaattatccatcgagatgtgaaatcatccaacattcttctgacagaaaacatgagagctaaagtagcagattttggatttgcaaggctagggccagtgaacactgatcagacacacatttctaccaaagtgaagggaacagttggttatttggaccctgagtatatgaaaacataccaacttactcccaaaagtgacgtttactcatttggaattttgcttttagaaattgtgactggccgtcgacctgttgagttgaagaaaactgttgaagaacgggttacactacgatgggccttcaggaagtataatgaaggaaatgtggtggaactggtggatcctttaatggaggaatctgtaaacgcagacgttctgatgaagatgcttgatttggcatttcaatgcgcagcacccatccgtgctgataggcctgacatgaaatcagtgggcgagcaattgtgggctataagggcagattacctcaagagtgcaagaagagaataa 1428 0.0 MDWVAHSYSSHGQELFYINGNVVNKVAFCEALQLCIAKGCDVKDCFGSVKCGMSFGMVSYIVLNLPSKAARKLFKEDSSSESTSKGDYKHPSTNVVVIFPGGALLVCCIALCPCFFAKRRKATSHTVLVKEQISMDSVASFDASVNDKIPASPIRVPPSSSRFSMSPKITRFQSLHLNLNQVTKATQNFSETLQIGEGGFGTVYKAKLEDGVVVAVKRAKKEHFDSLKTEFSSEIELLAKIDHRNLVKLLGYIEKGNERLLITEYVANGTLREHLDGMRGKILDFNQRLEIAIDVAHGLTYLHLYAEKQIIHRDVKSSNILLTENMRAKVADFGFARLGPVNTDQTHISTKVKGTVGYLDPEYMKTYQLTPKSDVYSFGILLLEIVTGRRPVELKKTVEERVTLRWAFRKYNEGNVVELVDPLMEESVNADVLMKMLDLAFQCAAPIRADRPDMKSVGEQLWAIRADYLKSARRE 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g03061 475 Gene3D Transferase(Phosphotransferase) domain 1 266 474 - -
Pste6g03061 475 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 161 265 - -
Pste6g03061 475 SMART serkin_6 189 463 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste6g03061 475 ProSitePatterns Serine/Threonine protein kinases active-site signature. 310 322 IPR008271 GO:0004672|GO:0006468
Pste6g03061 475 ProSiteProfiles Protein kinase domain profile. 189 463 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste6g03061 475 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 84 464 - -
Pste6g03061 475 Gene3D Phosphorylase Kinase; domain 1 158 265 - -
Pste6g03061 475 ProSitePatterns Protein kinases ATP-binding region signature. 195 221 IPR017441 GO:0005524
Pste6g03061 475 Pfam Protein tyrosine and serine/threonine kinase 194 461 IPR001245 GO:0004672|GO:0006468
Pste6g03061 475 SUPERFAMILY Protein kinase-like (PK-like) 169 464 IPR011009 -
Pste6g03061 475 CDD STKc_IRAK 195 461 - -
Pste6g03061 475 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 266 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g03061 Pste-Chr6 18840415 18847545 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g03061 169 464 Receptor kinase-like Gene Family AT5G59700 45.946 4.50e-76 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Pste6g03061 PK_Tyr_Ser-Thr 4.4e-52 CL0016