Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g03012 atgattgaaaccatttcgatcgagctgaaaagggaaagaatcacgagcaagaagggagaggcgaagcgtgagaacagagaggaagaagcgagaaggggaaaaacgcaagaaggtactcgcaactcgcgagaactgacaagcaaacactgggacgatcctgaatccgaacccgaagctaaggatatatttgagaagaacatatgcatctgctgcgatgagaagggaagtgaagagaaggaagctttggtttgcagcgaaaggggctgtcccgtcagtgtccacgccagctgcctcggctccgatcctcaattcgacgattccggcaaattcttctgtccctactgctggttcaagcgtgccgtccgcacgtgccgctgcctcggggacaaggctctgaccgcgcggcaagccatggcacgctttttggacatggacgacgcacgtgccaattctggtcctgcacgtgtgagttctggtggtgcgcgtgtgaacgtgattgatagggaggaaattgaagaggacactcgtgtgggcgcggattctggtgttggtgatggtgcatgtatgaaccaggttcaggatagggaggaaattgaggaggacgcacgtgtgaatgctgattttagtggtggtgccgcacgtgtgaaccccaattgggatagggagggaattgtggaggaagcacgtgtgcgtgcgcatgatagtggtggtggtgcacgcgggaaccccggtggggatagggaagaaattgtggaggatacacgtgtgggtgtggattatggtggtggtggtgctgcacgtgtggagccgggtcaggattgtgaagaaatcgtggaggagagtgaaacagacaaatctggagagaataaagatgaagggaaggtgtatgtgtcgagtagttctgtgagtgagaccattgattccgaatctgaggctgtaattaagaagaacaacaacaaaaggaaggatgagaaaaagatggttggtttgacaaggaaattgcgtgataacaagcattacaacactagaaggaaagctgccaatgaggaagaagttaccagcttccgatatttgaggcagcaaccacagagaatgaaattgactgcaaagcgaaggagattactttggacagctgaagaagaaaaagttctcaaggaaggagtgtcgaagttctcaacagaaaatcagaatatcccttggaggaaaattttggaatttggttgccgtgtatttgataagactcgcactcctgttgatcttaaggataaatggaagaatattatctccaaggaagatactcagggttacgaaatctgggttgaaatggcagaaaaacctgcacctagagctccaccttcatataaccatggcgttttcattttcactttgatgcagtgttcatttggcctgaaaaggactgctcttgaaatatttagttataggctcttagcagtgtcaacagcaccccctccaccaagtttgctgaatttgatatctatttcatccaagaggtcctcaacttcaaaacacagcatctttgacctcatcaacccaggctttcacagatggatctctgatctgattttcttctgcatcatcaacaacatcattcatggactgcagcatgatgctcaacctcttcagcagcacctaattagttttcttcctcaaaagaagtatagaacttcatcagaagccaacctgtcaacctggagccaaaagaagagaaccaccaagaaattctccttccattga 1755 0.0 MIETISIELKRERITSKKGEAKRENREEEARRGKTQEGTRNSRELTSKHWDDPESEPEAKDIFEKNICICCDEKGSEEKEALVCSERGCPVSVHASCLGSDPQFDDSGKFFCPYCWFKRAVRTCRCLGDKALTARQAMARFLDMDDARANSGPARVSSGGARVNVIDREEIEEDTRVGADSGVGDGACMNQVQDREEIEEDARVNADFSGGAARVNPNWDREGIVEEARVRAHDSGGGARGNPGGDREEIVEDTRVGVDYGGGGAARVEPGQDCEEIVEESETDKSGENKDEGKVYVSSSSVSETIDSESEAVIKKNNNKRKDEKKMVGLTRKLRDNKHYNTRRKAANEEEVTSFRYLRQQPQRMKLTAKRRRLLWTAEEEKVLKEGVSKFSTENQNIPWRKILEFGCRVFDKTRTPVDLKDKWKNIISKEDTQGYEIWVEMAEKPAPRAPPSYNHGVFIFTLMQCSFGLKRTALEIFSYRLLAVSTAPPPPSLLNLISISSKRSSTSKHSIFDLINPGFHRWISDLIFFCIINNIIHGLQHDAQPLQQHLISFLPQKKYRTSSEANLSTWSQKKRTTKKFSFH 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g03012 584 ProSiteProfiles Myb-like domain profile. 368 428 IPR001005 -
Pste6g03012 584 MobiDBLite consensus disorder prediction 261 301 - -
Pste6g03012 584 Gene3D - 376 453 - -
Pste6g03012 584 SUPERFAMILY Homeodomain-like 371 430 IPR009057 -
Pste6g03012 584 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 149 IPR013083 -
Pste6g03012 584 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 368 432 IPR017930 -
Pste6g03012 584 SMART sant 372 430 IPR001005 -
Pste6g03012 584 Pfam Myb-like DNA-binding domain 376 427 IPR001005 -
Pste6g03012 584 MobiDBLite consensus disorder prediction 1 58 - -
Pste6g03012 584 Coils Coil 11 31 - -
Pste6g03012 584 CDD PHD_SF 67 115 - -
Pste6g03012 584 CDD SANT_TRF 376 428 - -
Pste6g03012 584 ProSitePatterns Zinc finger PHD-type signature. 68 115 IPR019786 -
Pste6g03012 584 SUPERFAMILY FYVE/PHD zinc finger 64 119 IPR011011 -
Pste6g03012 584 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 21 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g03012 Pste-Chr6 18114913 18121473 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pste6g03012 Myb_DNA-binding 2.3e-06 CL0123