Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g02979 atgtccagctgcggcatcgatgttgctcctgagcaactctgctacatcccctgcaacttttgcaatattgttcttgcgtcaaagaaaagtcataccctaaaggacctcaagaaggtcacacacacggtgttttccttttctccttctgagcaagtgtgggtgagtgttccatgcagtagcctgtttgacattgtgaccgttcgatgtggtcactgcaccaatctatggtccgtgaacatggcggccgcgtttcagtcgctgtcatggcaagatgttcagggacctgggcactgcaatccagagtacaggattgacactggctccacgtccaaatgcaacaataggattgcaatgcgtgcacccaccactcatgtaactgaggaaagggttgtgaaccggcctcccgagaagaggcagcgcgtaccttctgcttataatcagtttataaaggaagagattcagaggatcaaagccaataatcctgatatcagtcacagagaagctttcagtacagctgctaagaactgggcacattttccccatattcatttcggcctgatgctggagagtaacaaccaagctaagatggagaatgtctctgagaagcatttaatgtcaagggctgcgctattgaataaatga 642 0.0 MSSCGIDVAPEQLCYIPCNFCNIVLASKKSHTLKDLKKVTHTVFSFSPSEQVWVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDVQGPGHCNPEYRIDTGSTSKCNNRIAMRAPTTHVTEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLESNNQAKMENVSEKHLMSRAALLNK 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g02979 213 Gene3D High mobility group box domain 125 203 IPR036910 -
Pste6g02979 213 CDD HMG-box_SF 140 176 - -
Pste6g02979 213 PANTHER PROTEIN YABBY 6-RELATED 1 26 IPR006780 GO:0007275
Pste6g02979 213 Pfam YABBY protein 53 186 IPR006780 GO:0007275
Pste6g02979 213 SUPERFAMILY HMG-box 130 179 IPR036910 -
Pste6g02979 213 FunFam axial regulator YABBY 5-like 124 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g02979 Pste-Chr6 17641812 17645607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g02979 8 196 C2C2-YABBY Transcription Factor Family AT2G26580 66.667 6.39e-86 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Pste6g02979 YABBY 1.6e-57 CL0114