Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g02960 atggtgcaatcaaagaagttcagaggtgtcaggcagcgccactggggttcatgggtatccgaaattcgccatccacttctgaagagaagggtgtggctagggacatttgaaacagccgaagaagcggctagagcctatgatcaagcagccattctgatgagtgggagaaatgccaaaaccaatttcccaataactcaaaccccagaaggtgatccaaagagcactacaagcgaggacacaccttccacctccaaggatctggaggaaatcttgcacgcaaagcttcgaaaatgtggcaaagtaccctcaccttctatgacctgtttgaggcttgacaccgagaactcccacattggagtgtggcaaaagcgtgcagggagacgttctgattcaaattgggtcatgacggttcagctgggaaacaaaagtgccaataataatcatcatcaagctcatagtagcaatagcagtagtagttctctttctctaccttcatctgataatcaccacccgaacccccatgagtctccatcattggctgtgagtgtgacaggtcatcaagaagtggtcagaggagagatcgacgaagaggagagaattgcccttcagatgatagaggaactcctcaacgacagaaactgtcctagcccatcatttatcaatattcaagaaagggatggtgatgaccatgacaccttttttctttaa 708 0.0 MVQSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPITQTPEGDPKSTTSEDTPSTSKDLEEILHAKLRKCGKVPSPSMTCLRLDTENSHIGVWQKRAGRRSDSNWVMTVQLGNKSANNNHHQAHSSNSSSSSLSLPSSDNHHPNPHESPSLAVSVTGHQEVVRGEIDEEERIALQMIEELLNDRNCPSPSFINIQERDGDDHDTFFL 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g02960 235 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Pste6g02960 235 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Pste6g02960 235 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Pste6g02960 235 MobiDBLite consensus disorder prediction 61 81 - -
Pste6g02960 235 MobiDBLite consensus disorder prediction 143 183 - -
Pste6g02960 235 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Pste6g02960 235 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 173 - -
Pste6g02960 235 MobiDBLite consensus disorder prediction 61 84 - -
Pste6g02960 235 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Pste6g02960 235 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Pste6g02960 235 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Pste6g02960 235 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Pste6g02960 235 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g02960 Pste-Chr6 17400308 17402605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g02960 1 210 AP2-EREBP Transcription Factor Family AT1G15360 58.986 1.77e-78 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pste6g02960 AP2 9.8e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g02960 6 17400308 17402605 Pste2g01754 2 18039113 18039724 ECH
Pste6g02960 6 17400308 17402605 Pste6g02960 6 17400308 17402605 ECH
Pste6g02960 6 17400308 17402605 Pste2g00125 2 498322 501716 PCT