Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g02934 atgccatggtcttttgcatctccctatgtcccaccacaacaccatgtcaacaacattccgaatttctccgacgatcccgtagtccaccgtgctcccgccgttgctagaccacgtggtgcttccgccccccgacgctcctctcgtcagcaccaccggcttcccgtcgaggatactcaaaacgccgacaacgtcaacgtcaacatcaacttcgacgcctacgagtcggtgccggtggaggtgagtggcagcaatgtgccggcgccggtgagtggcttcgacgaagcggacttggacgaaggtgtgaagaggaacattgagcggtgcaagtacgtgaagcccacgccggttcagcgtcacgcgattcccatcgcgtgtgcggggcgcgaccttatggcttgtgcacagactgggtcagggaaaacggcggcgttttgctttcccatcatatctgggattctgaagggccgttccgcttcatcatcaatgcatcgcggtgcccccattgcataccccactgcacttattctcacccctaccagggagttgtcctgccagatacgcgatgaagcgaataaattcgcacatcaaactggagtgaaggttgtggtggcctatggtggggctcctattaatcaccagctgcgggttttggagagaggtgttgacatattggttgcaactcctgggcgtttggtggatattattgagagagaaagggtttcgttgacgaagataaagtatcttgcattggacgaggctgatcgtatgttggacatgggttttgagcatcaaatacgcaagattgtcgatcaaatgcacatgcctcccccgggtattcgacagaccttgttgtttagtgccaccttccctaacgatatacagaagcttgcgtccgactttttatccaactacatattcctctctgttggaagggttggatccagtactgagctcattgttcagaagattgagcttgtacaggaccctgacaaaagggaccatcttgttaatcatcttcaacgtcaaaagctgcatggagccaaccccaagcatgctttaactcttgtctttgttgaaacaaagcgaggagctgattctttagaacactggttatcaagaaatggctttccagctattgccattcatggcgataaagttcaaatggaaagggagcgggcactaagatcttttaagtctggtgtgactccaattttggttgcaactgatgttgcttcgaggggattggatatcccccatgtggctcatgtgataaactttgacttgcccagagacatagatgactacgtacatagaattggacgaacaggccgcgcaggcaaatctggtttagccactgcctttttcagtgacaaaaacagccctattgctaaagggcttcttggactcttgcaagaagcaaaccaagaaattccatcttggctcaaccaatacgccgagtattcaccatctggtggtggtcgtcgccgtggtccgcattacagcattggcagttatggtggccgtgattatcgaaatgccactgaacctgaggtgcagaaatgcaactactacagtaccattggcaatgcagatagttcagtagagtgttacactgatactacctcttacgttgatacctctcatgacatagaagactccaatatagattcctcttttaacagtttgaatatatcctctgcacgcagttttaataatcaccctgatgttaactctgatttttatgaagttggtagggttgaagaagatgggccacgtgggtatgcatctgttgtggccactggatgggactag 1812 0.0 MPWSFASPYVPPQHHVNNIPNFSDDPVVHRAPAVARPRGASAPRRSSRQHHRLPVEDTQNADNVNVNINFDAYESVPVEVSGSNVPAPVSGFDEADLDEGVKRNIERCKYVKPTPVQRHAIPIACAGRDLMACAQTGSGKTAAFCFPIISGILKGRSASSSMHRGAPIAYPTALILTPTRELSCQIRDEANKFAHQTGVKVVVAYGGAPINHQLRVLERGVDILVATPGRLVDIIERERVSLTKIKYLALDEADRMLDMGFEHQIRKIVDQMHMPPPGIRQTLLFSATFPNDIQKLASDFLSNYIFLSVGRVGSSTELIVQKIELVQDPDKRDHLVNHLQRQKLHGANPKHALTLVFVETKRGADSLEHWLSRNGFPAIAIHGDKVQMERERALRSFKSGVTPILVATDVASRGLDIPHVAHVINFDLPRDIDDYVHRIGRTGRAGKSGLATAFFSDKNSPIAKGLLGLLQEANQEIPSWLNQYAEYSPSGGGRRRGPHYSIGSYGGRDYRNATEPEVQKCNYYSTIGNADSSVECYTDTTSYVDTSHDIEDSNIDSSFNSLNISSARSFNNHPDVNSDFYEVGRVEEDGPRGYASVVATGWD 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g02934 603 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 90 118 IPR014014 GO:0003724
Pste6g02934 603 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 121 307 IPR014001 -
Pste6g02934 603 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 63 485 - -
Pste6g02934 603 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 459 IPR027417 -
Pste6g02934 603 Gene3D - 309 488 IPR027417 -
Pste6g02934 603 Pfam Helicase conserved C-terminal domain 348 446 IPR001650 -
Pste6g02934 603 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 331 485 IPR001650 -
Pste6g02934 603 Pfam DEAD/DEAH box helicase 114 296 IPR011545 GO:0003676|GO:0005524
Pste6g02934 603 CDD SF2_C_DEAD 319 455 - -
Pste6g02934 603 FunFam ATP-dependent RNA helicase RhlB 310 488 - -
Pste6g02934 603 CDD DEADc_DDX3_DDX4 92 313 IPR044763 GO:0003724|GO:0005524
Pste6g02934 603 Gene3D - 46 308 IPR027417 -
Pste6g02934 603 SMART ultradead3 109 322 IPR014001 -
Pste6g02934 603 MobiDBLite consensus disorder prediction 34 59 - -
Pste6g02934 603 SMART helicmild6 365 446 IPR001650 -
Pste6g02934 603 FunFam Probable ATP-dependent RNA helicase DDX4 54 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g02934 Pste-Chr6 17155953 17158658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g02934 92 456 Eukaryotic Initiation Factors Gene Family AT3G13920 34.699 1.91e-59 202
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g02934 6 17155953 17158658 Pste6g02934 6 17155953 17158658 ECH