Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g02922 atggacgaagattccctcaaacgcaacacagattgcgtttatttcttggcctctccccttacttgtaagaagggggctgaatgtgagtatcgccataatgagattgctaggcttaaccctagggattgctggtactggctttctggccaatgcctcaacccaacctgtgcctttcgacaccctccattggatgggcatactggagtgccagtgccatctgaacctacacaaccttcattacttgcaaacaagacaatggttccctgttattttttcttcaatggattttgcaacaaaggtgacagatgctcgtttttgcatgggcctgatgatagcctttttactgtaaaacctgtgaagaatgacaatagaagcactgatccactcaacctagacagtaaaacatcaccaggaaataaaacaggtgtagtgtcaacaccaactaacctatctttaactggtccaaagaaatcatctgataaacttcagcctaaggatgataatcagctacaattacccaaaaatgttgagcggcagggtgattgtctagagatatctgctttagaatataaagaagctgcagtgagtaggtcagactctctgtttccaaatgatggccttgttcataatgtatctcacttaagcaccgagcagagttcagaggagcaagtaaatagtcacgtagagcctgaggagcggtgggaatcttcccctcattcccctggatttgatgttcttgttcatgatgaattggagaacttggattacaatgaagattctgaatatctacctgtgctagatagggatgagcaagagctaaacgagcagtacttggggtatgaatttaaagatccagttgagtatgatactatgtacccagcagctgatattctctacgaacaagaaacatataatggttacagatatttagatagagatcttactcatcctaatggaagaacagttcatgcttattccagagatatcttagattctatattgtccaggaaaaggattcggatgtcagctgagatgactgcttatgacaagaatttagatctgcgtgaccatctgagaagacgtagagaaattaatgattctcctgttgcagatttcttaagcagacaagactcatctttgatggttcaaaaccaggaaaggcatggcattgagcagcagccaagtagaagattgacatcacaattgggatatagagccatggattcgatgggagaggttgaaactctttcaattgctaataagcacaggttattcaggcattcccagcaacatagaccaaggaagcaatatagagaaaaactacctaaacggccgcttccttcatctaaaacatccaggaaacccgtttttaaaccaaggggatttattcacgagtcctctacattttcaggacccaagactcttgcagaaattaaagaggagaagaagaaggctgaaggaagtttacattggagaaacacagcaactgattttcaggatcccaaacctctgagtgaaattctcaaggacaaaaggaccatcgatcagtga 1551 0.0 MDEDSLKRNTDCVYFLASPLTCKKGAECEYRHNEIARLNPRDCWYWLSGQCLNPTCAFRHPPLDGHTGVPVPSEPTQPSLLANKTMVPCYFFFNGFCNKGDRCSFLHGPDDSLFTVKPVKNDNRSTDPLNLDSKTSPGNKTGVVSTPTNLSLTGPKKSSDKLQPKDDNQLQLPKNVERQGDCLEISALEYKEAAVSRSDSLFPNDGLVHNVSHLSTEQSSEEQVNSHVEPEERWESSPHSPGFDVLVHDELENLDYNEDSEYLPVLDRDEQELNEQYLGYEFKDPVEYDTMYPAADILYEQETYNGYRYLDRDLTHPNGRTVHAYSRDILDSILSRKRIRMSAEMTAYDKNLDLRDHLRRRREINDSPVADFLSRQDSSLMVQNQERHGIEQQPSRRLTSQLGYRAMDSMGEVETLSIANKHRLFRHSQQHRPRKQYREKLPKRPLPSSKTSRKPVFKPRGFIHESSTFSGPKTLAEIKEEKKKAEGSLHWRNTATDFQDPKPLSEILKDKRTIDQ 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g02922 516 MobiDBLite consensus disorder prediction 215 239 - -
Pste6g02922 516 MobiDBLite consensus disorder prediction 117 172 - -
Pste6g02922 516 SUPERFAMILY CCCH zinc finger 84 108 IPR036855 GO:0046872
Pste6g02922 516 SMART c3hfinal6 7 34 IPR000571 GO:0046872
Pste6g02922 516 SMART c3hfinal6 39 62 IPR000571 GO:0046872
Pste6g02922 516 SMART c3hfinal6 83 109 IPR000571 GO:0046872
Pste6g02922 516 MobiDBLite consensus disorder prediction 422 516 - -
Pste6g02922 516 Pfam Zinc-finger containing family 7 63 IPR041686 -
Pste6g02922 516 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 1 516 - -
Pste6g02922 516 ProSiteProfiles Zinc finger C3H1-type profile. 83 110 IPR000571 GO:0046872
Pste6g02922 516 MobiDBLite consensus disorder prediction 475 490 - -
Pste6g02922 516 MobiDBLite consensus disorder prediction 224 238 - -
Pste6g02922 516 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 86 109 IPR000571 GO:0046872
Pste6g02922 516 Gene3D - 76 142 - -
Pste6g02922 516 Gene3D - 2 63 - -
Pste6g02922 516 ProSiteProfiles Zinc finger C3H1-type profile. 37 63 IPR000571 GO:0046872
Pste6g02922 516 MobiDBLite consensus disorder prediction 424 439 - -
Pste6g02922 516 ProSiteProfiles Zinc finger C3H1-type profile. 6 35 IPR000571 GO:0046872
Pste6g02922 516 FunFam Zinc finger CCCH domain-containing protein 17 1 63 - -
Pste6g02922 516 MobiDBLite consensus disorder prediction 118 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g02922 Pste-Chr6 17004839 17009712 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pste6g02922 zf-CCCH_3 1.8e-11 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g02922 6 17004839 17009712 Pste6g02922 6 17004839 17009712 ECH